DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nonC and ATM

DIOPT Version :9

Sequence 1:NP_001284967.1 Gene:nonC / 31625 FlyBaseID:FBgn0263968 Length:3218 Species:Drosophila melanogaster
Sequence 2:NP_001326746.1 Gene:ATM / 823975 AraportID:AT3G48190 Length:3013 Species:Arabidopsis thaliana


Alignment Length:2379 Identity:465/2379 - (19%)
Similarity:768/2379 - (32%) Gaps:817/2379 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 NIAGLGGSESMWSPGGGKS---HDVAQAFANALLLR----NMNHVVG-KGQPVVQNHRKAYQCKG 117
            ::|||..:..::.|.....   |..:.....||||.    |::.|.. .|||||.          
plant  1176 SLAGLIETSQLFIPNAEPKYFIHFCSHWLLPALLLHEDHTNLDWVAKMAGQPVVV---------- 1230

  Fly   118 DTINPMANGEDLRLSKIIRRLINENNPTVSLELCSKLDQAVRTPINMGYMTC------------- 169
                                |:.||...: ..:|..|..:..:..:.|.|..             
plant  1231 --------------------LVKENFVPI-FSICMGLHCSKTSECDKGAMVLQNSILYVGETSEN 1274

  Fly   170 --------SFVWILDNMLTLYKQCP-PPVLEECSKTLGLI------GFINRKSYPIYEEFIVKNY 219
                    :.|.|:..:|:.....| |||......|:.|.      ||:....||       ||.
plant  1275 ERDKLIKQNMVSIVSFILSCASSSPEPPVPTFSRDTISLAVQTVVDGFLENTDYP-------KNA 1332

  Fly   220 KSSKRMQKYMIMALRATLSCDTKCELHMYADKIMLLLKDFLENAESADIFIVVSNTLVQFAASYA 284
            ..:.|:..:.                   .|::.:.:.:.                      .|.
plant  1333 AITDRINIFR-------------------PDRVFMFITEM----------------------HYR 1356

  Fly   285 ETFECHFTDVVDIVIGWQLEAGQPTDLKTHCAQVLEQLT------PFFSKQIDFSYGLLDQFVED 343
            .:..||....                  .|....||:||      ......:::.:.|:.||:  
plant  1357 MSAACHHRHT------------------RHHLAALEELTILLGHRALVPSSLNYIFNLVGQFI-- 1401

  Fly   344 ITTLEEGEPANTAERVGAFVGAFNTLLKCLARMQIFVGMPTCECIVKMAVDH---LIKIMPTLHL 405
                  |.|:...:..        ::..||  :.:|...|..| ||.:..|.   |:..:.|..:
plant  1402 ------GYPSLQDQCC--------SIASCL--LDLFKSNPAKE-IVSVLGDQLQFLVSKLVTCCI 1449

  Fly   406 NTEALVNINELICICLLNNFTGLDPILLEQVLL-------DQVKRMISLTELQRQSVL------- 456
            :.||...|:......|:|        ||.::::       :.::.:..|.:|:...|:       
plant  1450 DAEADTKISGAKSSQLVN--------LLHKLVVSSDSSLNEDIRDLEPLPDLKYFQVIRESHIRI 1506

  Fly   457 --------YLLLCTVR------RLRARLTPSLVHFIFQS-----------------------NPY 484
                    :||.|:.|      |..:|...:|.:.:..|                       |..
plant  1507 CEAYSPRNHLLKCSRRSNYLPPRFLSRSLQALHNKLIASEVSQEDTNGETAETFWQSDDEIVNAV 1571

  Fly   485 MTKVRLRSPGETSYKLLLRTCQETLLIRNVPLLQQAYKYLVDDIDACLEKLLITAPRSKARKASV 549
            .|.||:.:..|.                      .:.:.||.|.   |.::.|..|.:       
plant  1572 WTLVRVSASDEA----------------------DSMRLLVSDF---LSRIGIRDPHT------- 1604

  Fly   550 LLVFHL-------SALAALAKQTSSIIGMYACKPSILELLLTNCRAHELKFWSKY---------P 598
             :||||       ..|......|.|.:..........|.|:|     .|.|..||         .
plant  1605 -VVFHLPGNLVSMHGLQGFGHNTGSKVRSLTENGISDETLIT-----LLNFLKKYLLDDSVKIID 1663

  Fly   599 AAQQAIFGLLVVHCQANHNFRTNSSLLRDQELSAENTSPTANSFASILRFLDSVLGQAHQLAPQN 663
            ...|.:.|:                      ||.|......:||.|..|.|..|.|:.       
plant  1664 VTSQTLRGI----------------------LSTERGQQALSSFDSCERALIEVHGRG------- 1699

  Fly   664 LRVLLQWIQMLLRECR-----EKIDL------LMEQENF-RGICRNIAATASKLVPLESAACIQT 716
              |.|..::.:|.:.:     ||..|      ..:.:|| |.||        :||....|.|   
plant  1700 --VNLDIVEKILLDSQKQFKAEKFSLETPEVWSTDNKNFDRWIC--------QLVYCMIALC--- 1751

  Fly   717 VLDYGLERLEKYPKLLILYRDTALQQLQMLSTNYHAPYF---------QIYAQLPLHLTLTGGES 772
                     |..|..|       .|.:.:|........|         :|...:.||..:|    
plant  1752 ---------EDVPIRL-------CQNIALLKAEISELLFPSVVVSLAGRIGMDINLHDLIT---- 1796

  Fly   773 SMPGMASRRVSVWQQRISQYSAVRDNVFRDFFDRVQKPEQDSLIHCLRELFVRSCQV------AP 831
                                |.|::::|.| .:::.|.:| .:::.|.||  |.|.|      :.
plant  1797 --------------------SQVKEHIFTD-SNKLTKSKQ-VMLNTLNEL--RMCYVLERSIFSG 1837

  Fly   832 QDERQMNLSQCTKRCQRLAIAWLQFEAARYCVDQRLRTTVGKPQETFLGFEAIIMRHARLLSGCA 896
            |.:|:.|...|:     .|......|:....:...:.|...|..  :|..:.:::..:.::  |.
plant  1838 QTKREKNSRSCS-----TAAKIRDVESGSNGMAASITTNWEKVY--WLSIDYLVVAGSAVV--CG 1893

  Fly   897 KEIERSALDDLSLEELLSMQSNLSL---LLGFLDALEKLIYNAAEGSAFALRPPEKQVAAFFRLN 958
            ..:..|...:...||..   .||||   ...:.|.|...:              |..|:|..|:|
plant  1894 AYLTASMYVEYWCEEKF---GNLSLGDPDFSYHDKLPDHV--------------EILVSAITRIN 1941

  Fly   959 NPTCQSWFNRI---RIGVVIIAMH--------VQQPELVIRYAQQILVNSKTQD-------PTYS 1005
            .|  .|.:..|   ::...||...        ::..:|..|..:.::.:|.:::       ||.|
plant  1942 EP--DSLYGVIHSNKLSAQIITFEHEGNWTRALEYYDLQARSQKMVVPSSLSENLEVEQFQPTTS 2004

  Fly  1006 QAIVYMAWSLV----------SCQEADSLRGLRLWARG----KSCKSYK----WLKYAADQAAGK 1052
            ..........|          |.|:...:..|.|:.||    :.|..|.    .|:|.|...|||
plant  2005 ARHSVFGEGEVQRQPFKGLIRSLQQTGCMHVLDLYCRGLTSREGCFQYDPEFIELQYEAAWRAGK 2069

  Fly  1053 RESALAGYRTILAEKELQSELEP--HTRQFVVSQMMQC----LQD---LGQWSQLVELKQQ---Q 1105
            .:.:|. |.        |:..:|  |.:.....:.:.|    ||:   .|.:.:|.:.|::   .
plant  2070 WDFSLL-YP--------QTHCQPLQHAKNNNYHESLHCCLRALQEGDYDGFYGKLKDTKKELVLS 2125

  Fly  1106 MTRPEDRELNPFLQRSNVEVNALERLLAKSEESCSSMDALGGVFQQLSLWPSNWDESVSSSGLSE 1170
            ::|..: |...|:..:.|::..|..|               |:     :|...|..|        
plant  2126 ISRASE-ESTEFIYSTVVKLQILHHL---------------GL-----VWDLRWTTS-------- 2161

  Fly  1171 RASFSSIHMRQRTEDIVLHKLLEDRCVP--DQAKNLLDTQWRDSLLNPSFDQRSCKELTLLRHIV 1233
              |..|:|     ..:|......|..:|  ||. :.|:..|...:..........:.....|.::
plant  2162 --SHQSVH-----GYLVKQMACVDPVIPTMDQL-SWLNKDWNSIITQTQLHMTLLEPFIAFRRVL 2218

  Fly  1234 QGVSGGQELSLLPVSSGRCQNRSKFISSAILMRCLAWTQLLRQHCAPGSWETLCLDAAAAAREEG 1298
            ..:.|.::.::           ...:.||.|:|  ..|:......:...::.||      ||..|
plant  2219 LQILGCEKCTM-----------QHLLQSASLLR--KGTRFSHAAASLHEFKFLC------ARSNG 2264

  Fly  1299 NLQLAETLLTQFFGQPIGEIAALFSLEQGVQTDNPEMLRGYSELVKCLHLQQQQSQTHSGDLSSS 1363
            .             ||:                 |:.| |..|..|.||.|        |....|
plant  2265 Q-------------QPV-----------------PDWL-GKLEEAKLLHAQ--------GRHEVS 2290

  Fly  1364 IDVCAALCLNIQKSNNQPAAGADLLLNLADWIA-VRTCNGLTTNQSPVLIQLLDQLPECPLTCDS 1427
            |.:...:..|.|....    .:|:...:..|:| .|:.|..|     :|.:.|            
plant  2291 ISLANYILHNYQLKEE----ASDIYRVIGKWLAETRSSNSRT-----ILEKYL------------ 2334

  Fly  1428 SQP---LAIPQAERMVARLVHSCLQ---QRPNYAEALIAYGNWCYRWGKKVADSCCVLTQADATA 1486
             :|   ||..|:.::..|||....|   ...:||:||.                           
plant  2335 -RPAVSLAEEQSSKICKRLVDRQSQTWFHLAHYADALF--------------------------- 2371

  Fly  1487 ISQALDIPQPLESEKLDELLQALSTEQPPANCVEVCPDAARARDDEAAKNRLRRLTFLADKTPEA 1551
                         :..:|.|.:...:.           |.|.|..:..:..:....|.:.|..|.
plant  2372 -------------KSYEERLSSSEWQA-----------ALRLRKHKTKELEVLIKRFKSSKKAEQ 2412

  Fly  1552 LDAILQIWRRAIANTYDYYKDAARSYFQYLSFKSGSGPEKPEGEGVVSQRERLHVDDSNLVTTTL 1616
            .|..|:|        .|..|....              :|.|.       |:|.||..|.:...|
plant  2413 SDYSLKI--------QDLQKQLTM--------------DKEEA-------EKLQVDRDNFLKLAL 2448

  Fly  1617 ----RLLRLIVKHASGLQEVLEQGLHTTPIAPWKVIIPQLFSRLNHHEPYVRKSVCDLLCRLAKS 1677
                |.|.:..|:  .::.|..|......:|..|.:|..:.|.:...:.|             |.
plant  2449 EGYKRCLEIGDKY--DVRVVFRQVSMWFSLASQKNVIDNMLSTIKEVQSY-------------KF 2498

  Fly  1678 RPQLVIFPAVVGANREQQDATAPPATARPTTEDACCYGYLLGELSKQAPEAVQHVKLMVKELRRV 1742
            .|.:....:.:|:::::.                       |..|.|:        .:|..:|::
plant  2499 IPLVYQIASRLGSSKDES-----------------------GSNSFQS--------ALVSLIRKM 2532

  Fly  1743 CLLWDEYWIHSLAHIYNTYVSRVSALATDFRPDDHEGKNNRFNVWRPQLLADLEALVAVTSRPPE 1807
                      ::.|.|:| :.::.|||...|..|::...|.|.|...:.||....|..|:.    
plant  2533 ----------AIDHPYHT-ILQLLALANGDRIKDNQRSRNSFVVDMDKKLAAEHLLQDVSH---- 2582

  Fly  1808 TTYE----RSFRKRFDAPIRLT------VDALRHRRYPEAWDKLKQLYHILQSNMIRGSGSTLKM 1862
              |.    |..::..|..|:|.      .|..|....|.....:|||                  
plant  2583 --YHGPMIRQMKQLVDIYIKLAELETRREDTNRKVALPREIRSVKQL------------------ 2627

  Fly  1863 QSISPVLCGIGRMRISMP-GLDAHGPDGDQVYIESVESSVCVLPTKTKPKKVAFYGSNGQRYTFL 1926
             .:.||:..      ::| .......:|...:...:..||.|:.....||.|..:||:||:|..|
plant  2628 -ELVPVVTA------TIPVDRSCQYNEGSFPFFRGLSDSVTVMNGINAPKVVECFGSDGQKYKQL 2685

  Fly  1927 FK-GMEDLHLDERIMQFLSISNAIMACRSDAPGNGCYRAHHYSVIPLGPQSGLISWVDGVTPVFA 1990
            .| |.:||..|..:.||..:.|..:....|. .........|.|||..|.:|::.||||..|: .
plant  2686 AKSGNDDLRQDAVMEQFFGLVNTFLHNNRDT-WKRRLAVRTYKVIPFTPSAGVLEWVDGTIPL-G 2748

  Fly  1991 LYKKWQQRRSQVAGNAGAGAVANVPRRFTDLFYNKLSPLLAKHNMQVSDPRRQWPISVLLQVLDE 2055
            .|.....|.....|..|.|              |...|...:|.....|.|:.:        :|.
plant  2749 DYLIGSSRSEGAHGRYGIG--------------NWKYPKCREHMSSAKDKRKAF--------VDV 2791

  Fly  2056 LSQETP-NDLLARELWCQAGNAAEWRQSVRRFVRCMSVMSMIGYVIGLGDRHLDNVLINLGSGDI 2119
            .:...| ......|.:.|   .|:|......:.|.::..||:||::||||||..|:||:..:.::
plant  2792 CTNFRPVMHYFFLEKFLQ---PADWFVKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEV 2853

  Fly  2120 VHIDYNVCFEKGRTLRIPEKVPFRLTQNLVQAMGITGIEGPFRLGCEYVLKVMRKERETLLTLLE 2184
            ||||..|.||:|..|:.||:||||||::::..|||||:||.||..||..|.|||..:|.|||::|
plant  2854 VHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGITGVEGVFRRCCEETLSVMRTNKEALLTIVE 2918

  Fly  2185 AFVYDPLVDWTTNDDAQALRRSLNAKLQESADGGGAGGL 2223
            .|::|||..|..: ..:||:|.   |..|..||....||
plant  2919 VFIHDPLYKWALS-PLKALQRQ---KETEDYDGMNLEGL 2953

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nonCNP_001284967.1 SMG1 571..1140 CDD:292413 123/655 (19%)
Rapamycin_bind 1738..1845 CDD:285924 26/116 (22%)
PIKKc_SMG1 1894..2196 CDD:270714 104/303 (34%)
FATC 3189..3217 CDD:280430
ATMNP_001326746.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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