DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nf-YC and pole4

DIOPT Version :9

Sequence 1:NP_572354.1 Gene:Nf-YC / 31622 FlyBaseID:FBgn0029905 Length:601 Species:Drosophila melanogaster
Sequence 2:XP_017213760.1 Gene:pole4 / 553610 ZFINID:ZDB-GENE-050522-309 Length:179 Species:Danio rerio


Alignment Length:127 Identity:38/127 - (29%)
Similarity:65/127 - (51%) Gaps:11/127 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 ATTVASGAKEKTTKATRTQVARKPPPTID----NFWPNIVSEVHSIGQVDAKHQVLPLARIKKIM 163
            ||..|:.|:.:..::...:..|...|..|    ...|...::.|.:.:       |||:|||.:|
Zfish     3 ATASAAPAESELDRSGAEEEPRGTEPEEDAGSGQTGPTAGAQQHRLAR-------LPLSRIKTLM 60

  Fly   164 KLDENAKMIAGEAPLLFAKACEYFIQELTMHAWVHTEESRRRTLQRSDIAQAIANYDQFDFL 225
            |.|.:..:.:.|:..:.|||.|.|::.:...|.|:.::.:|:||||.|:..||...|:|.||
Zfish    61 KADPDVTLASQESVFIIAKATELFVEMIAKDALVYAQQGKRKTLQRKDLDNAIEAIDEFAFL 122

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nf-YCNP_572354.1 HAP5 <130..>246 CDD:227533 32/100 (32%)
pole4XP_017213760.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5208
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1622159at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4325
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.850

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