DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment iav and trpv4

DIOPT Version :10

Sequence 1:NP_572353.1 Gene:iav / 31621 FlyBaseID:FBgn0086693 Length:1123 Species:Drosophila melanogaster
Sequence 2:XP_002932129.1 Gene:trpv4 / 100496204 XenbaseID:XB-GENE-998899 Length:868 Species:Xenopus tropicalis


Alignment Length:618 Identity:155/618 - (25%)
Similarity:266/618 - (43%) Gaps:139/618 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 LRVFPNLAL-DVMEGEEYLGASALHLSIAYSNNELVADLIEAGADIHQRAIGSFFLPRDQQRANP 218
            ||.|.|... ||.    |.|.:|||::|.......|..|:|.|||:|.:|.|.||.|:|:     
 Frog   219 LREFINSPFRDVY----YRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDE----- 274

  Fly   219 AKSTDYEGLAYMGEYPLAWAACCANESVYNLLVDCG---SDPDAQDSFGNMILH----------- 269
                  .|..|.||.||:.|||.....:.:.|.:..   :|...|||.||.:||           
 Frog   275 ------GGYFYFGELPLSLAACTNQPDIVHYLTENAHKKADIRRQDSRGNTVLHALVAIADNTRE 333

  Fly   270 -----------MVVVCDKLDMFGYALRHPKTPAKNGIVNQTGLTPLTLACKLGRAEVFREMLELS 323
                       :|:.|.||        :|.: :...|.|...::||.:|.|||:..:|:.::.|.
 Frog   334 NTKFVTKVYDLLVIKCVKL--------YPDS-SLEAIFNNDSMSPLMMAAKLGKIGIFQHIIRLE 389

  Fly   324 ---------AREF--WRYSNITCSGYPLNALDTLLPDGRTNWNSALFIILNGTKPEHL-DMLDGG 376
                     :|:|  |.|..:..|.|.|:.|||...:     .|.|.|::..:|.|:. :||...
 Frog   390 IKDEEARHLSRKFRDWAYGPVYSSLYDLSMLDTCGEE-----VSVLEILVYNSKVENRHEMLAVE 449

  Fly   377 IIQRLLEEKWKTFAQNQFLKRLLILSTHLLCLSVSVYLRPAHDGEAEDEDSEGSDASAAALLDIQ 441
            .|..||.:||:.|....|...::.....::..::..|.||.                        
 Frog   450 PINELLRDKWQKFGAVSFYISVVSYLIAMIIFTLIAYYRPM------------------------ 490

  Fly   442 SDEGDSGGGDYNAQTVARY---CAEFATLV-GVLSYVIFQQGDEIKNQGLSAFLKQLSHAPAKAI 502
                 .|...|..:|...|   ..|..||: ||:.::     ..||:    .|:|:.....:..|
 Frog   491 -----DGTPPYPYRTTMDYMRLAGEIVTLLTGVVFFI-----TNIKD----LFMKKCPGVNSLFI 541

  Fly   503 --------FLFSNLLILACIPFRLIGDTDTEEAILIFAVPGSWFLLMFFAGAIRLTGPFVTMIYS 559
                    |::|.|:|:..:.: |:| .::..|:::||:...|...::|...::|||.:..|:..
 Frog   542 DGSFQLLYFIYSVLVIITAVLY-LVG-IESYLAVMVFALVLGWMNALYFTRGLKLTGTYSIMLQK 604

  Fly   560 MITGDMFTFGIIYCIVLCGFSQAFYFLYK------------------GHPQVQSTMFNTYTSTWM 606
            ::..|:|.|.::|.:.:.|::.|...|..                  .:|..:.:  :|::...:
 Frog   605 ILFKDLFRFLLVYLLFMIGYASALVSLLNPCTSQESCIETSSNCTVPEYPSCRDS--STFSKFLL 667

  Fly   607 ALFQTTLGDYNYPDLNQTTYPNLSKTVFVIFMIFVPILLLNMLIAMMGNTYVTVIEQSEKEWMKQ 671
            .||:.|:|..:...:|...||.:...:.|.::|...:||||||||:||.|...|.::|::.|..|
 Frog   668 DLFKLTIGMGDLEMINSAKYPAVFIILLVTYIILTFVLLLNMLIALMGETVGQVSKESKQIWKLQ 732

  Fly   672 WAKIVVTLERAVPQADAKGYLEAYSIPLGPSDD 704
            ||..::.:||:.|....|.:.....:.:|.:.|
 Frog   733 WATTILDIERSFPVCMRKAFRSGEMVTVGKNLD 765

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
iavNP_572353.1 TRPV 126..757 CDD:454755 155/618 (25%)
ANK repeat 132..164 CDD:293786 4/9 (44%)
ANK repeat 173..203 CDD:293786 12/29 (41%)
ANK repeat 230..261 CDD:293786 9/33 (27%)
ANK repeat 299..329 CDD:293786 10/40 (25%)
trpv4XP_002932129.1 TRPV4 98..830 CDD:411979 155/618 (25%)
ANK repeat 187..227 CDD:293786 4/7 (57%)
ANK repeat 233..264 CDD:293786 12/30 (40%)
ANK repeat 280..314 CDD:293786 9/33 (27%)

Return to query results.
Submit another query.