DRSC/TRiP Functional Genomics Resources

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Protein Alignment pod1 and coro1cb

DIOPT Version :9

Sequence 1:NP_001245554.1 Gene:pod1 / 31620 FlyBaseID:FBgn0029903 Length:1266 Species:Drosophila melanogaster
Sequence 2:XP_017211752.2 Gene:coro1cb / 562849 ZFINID:ZDB-GENE-030131-418 Length:1392 Species:Danio rerio


Alignment Length:1299 Identity:311/1299 - (23%)
Similarity:509/1299 - (39%) Gaps:303/1299 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 FDLSTQKEIFSNNEHPEVIQSASWREDGSVLATSCKDKNVRIFDPRAAGSPIQLTAESHQSIKDS 220
            |.|.::|:....: ||......|.|:|...|.|.|:|                 ..:|:.  |||
Zfish   189 FSLQSEKDKLLES-HPFQNVGDSERKDKGELQTLCRD-----------------IGKSND--KDS 233

  Fly   221 -RVVWLGNQHRILTTGFD----AARLRQVII---------RDVRNFNTPEKTLELDCSTGILMPL 271
             ..||  ........||:    |..|..||:         .......:.:..|::|.:       
Zfish   234 FGTVW--PTESTDADGFEYLDRADSLHPVIVAKSPSVAGLHSYSGHASNQDNLQVDKN------- 289

  Fly   272 FDPDTNMLFLAGKGDTTINYLEITDKD-------------PYL------------IEG---LRHT 308
            ..|||.|..|....||...:..:|.|:             |.|            .||   :.||
Zfish   290 ITPDTLMCILKEPNDTPKTHFTVTPKENLRKDQRNPTFHSPLLGKEETALPEWGETEGKDKILHT 354

  Fly   309 --GEQTKGACLVPKRALKVMEAEVNRVLQL----TSNMVIPIMYQVPRKTYRDFHADLYPETTGY 367
              ||.:    |:..:...:...:.:.|::.    |:.:.:.|.....:|....||.||......:
Zfish   355 PFGESS----LLRSKLTTLDSFDSDTVIECRNADTALVQLRIEEDFEQKALSTFHPDLSQSNAVF 415

  Fly   368 KTE-----------------LVAGEWLNGSNQAVPKMSLDPAKREHG----DEPIIIHRGNLSDF 411
            .||                 :::.|.|..|:.....:|..|...::|    |.| .:.|.:.|.:
Zfish   416 HTEKKNCDKGAFAVMEKHSTVLSSESLTESSAKKVCVSNAPHPAKNGLWGTDAP-CVKRDSESVY 479

  Fly   412 VKNLENQRA--KSNTTGKPNQQAKRNDNEHFVMLNTGNNFEEKNGN------------------- 455
            .|.::.:..  :.:..|.||::.           ||...||...||                   
Zfish   480 PKAVQARSTEWRKDCDGPPNRRR-----------NTSPLFELSGGNGKIQDVRLGKGVCDPKIYM 533

  Fly   456 -DNSNE------SNGK-------KSTPSQSQPDGECSELIRKFEAKYKVDSEKEKAH-------- 498
             |:||.      ||||       ....|.|..|.:.:.:.:    |..:..|||..:        
Zfish   534 LDDSNTEVKEILSNGKCLDQMIVNQFNSFSHSDLDATRVAQ----KASLQREKEPLYFTAVITPT 594

  Fly   499 --AYAQSHEDDKESPTEHEHSTGSSEEVSSSGGLDNHSASGS--HSPPKPMPRTSRSNSLPEASD 559
              .|....::|.:....|........::|:.   ||.:...:  ..||.|:|:..: |...:|: 
Zfish   595 CQIYTFPDQEDSQFYVPHSQIQNMMPDISAE---DNQTDKKAKIKGPPPPVPKKPK-NPFKKAA- 654

  Fly   560 SAGESSSTNTPRPRP------------RTTAA-------SAYKPRLGPKPF----------SSTT 595
            ...||:|.:...||.            |..||       |.:...|...|:          |...
Zfish   655 HLKESASHSVDEPREYSDLLLKNIKMGRRQAALQSVEDFSTHASCLDMLPYYMDSPSYMCMSVEP 719

  Fly   596 GDVSFDKVFAVP---LAPGSHENISNVGQDSGVEMTPAQGAKPDLIVEIEIKKKHERE------P 651
            .:....:.:.||   :|| .::|:.....|..::.......:|.|      |||.:|:      |
Zfish   720 ENADIPRYYLVPYDEIAP-DYDNLIETADDEELKEMDMSQLRPIL------KKKAKRKGPPPPIP 777

  Fly   652 AVSGNGVQKSLTTSERRKSSADDD-ESSDKIFEQNSESSEN-STEGEDRTD----ADLRRNCTSR 710
            ....|...|  |.:|:.::|.|.: |:.|...|.....||: ..:.||..|    |.|.|:..:.
Zfish   778 KKPQNPFVK--TDTEQIRASKDSEFENVDLPLEYGRRDSESFMMDVEDEEDCKPTAALTRHLQAA 840

  Fly   711 SSFAERRRIYENRSKSQVDEKPQSPVPLRREHSKVEPLKPNQQQQQQGNVIDTKRISVPEGKLME 775
            .|.:|...:...|..|:          |.|:.:|:..           .||...|.::.|.    
Zfish   841 CSASEENDLSRFRPVSE----------LIRDSNKIHE-----------KVIHHSRTNIMEA---- 880

  Fly   776 EHRRGNGAG---LKKSATEAAFSAAST-----KRTS---TVFGKV---SKFRHLKGTPGHKSTHI 826
              |....||   ||.|..:.||...::     :|:|   .:..:|   |||||:.|.........
Zfish   881 --RPDVTAGCQNLKVSQMKQAFDVQTSSHKMERRSSPKKEMIRRVVRQSKFRHVFGQAVKNDQCY 943

  Fly   827 ENLRNLSRQIPGECNGFHANQERVA--VPLSGPGGKIAIFELSRPGRLPDGVIPSLVNGSN-IMD 888
            :::| :|| :..:......|.:.||  |..|| ||...:..|.:.||: |...|::...:. ::|
Zfish   944 DDIR-VSR-VTWDSAFCAVNPKFVAIIVEASG-GGAFLVLPLQKTGRI-DKAYPTVCGHTGPVLD 1004

  Fly   889 FQWDPFDAQRLAVACDDGIVKIWHIEAGGLSEPTNTPAGELTAHLDKIYFIRFHPLAADVLLTAS 953
            ..|.|.:...:|...:|..|.:|.|...||:...:.|...|..|..::..:.:||.|.:|||:|.
Zfish  1005 IDWCPHNDHVIASGSEDCTVMVWQIPENGLTSALSEPVVVLEGHSKRVGIVTWHPTARNVLLSAG 1069

  Fly   954 YDMTIKLWDLRTMTEKCSLSG-HTDQIFDFAWSPCGRLGATVCKDGKIRVYNPRKSETPIREGNG 1017
            .|..|.:|::.|.....:|.. |.|.||...||..|.|..|.|||.|:||.:|||.:....:...
Zfish  1070 CDNLIIIWNVGTGEALINLEDMHPDVIFSVCWSRNGSLICTACKDKKVRVIDPRKGKITAEKDKA 1134

  Fly  1018 PVGTRGARITWALEGHYIVCTGFDKVSERQISVYNAQKLSAPLNTASLDVSPSILIPFYDEDSST 1082
            ..|.|..|..:..:|: :..|||.::||||::::|.:.:..|::...:|.|..:|:||||.|::.
Zfish  1135 HEGARPMRAIFLADGN-VFTTGFSRMSERQLALWNPKNMEEPISVHEMDTSNGVLLPFYDPDTNV 1198

  Fly  1083 LFVTGKGDSTIYCYEITDEEPYICPLSHHRCTSLHQGLSFLTKNHCDVASVEFSKAYRLTNTTIE 1147
            :::.|||||:|..:|||||.||:..|:........:|:.::.|...||...|.::.|:|.....|
Zfish  1199 VYLCGKGDSSIRYFEITDEAPYVHYLNTFSSKEPQRGMGYMPKRGLDVNKCEIARFYKLHERKCE 1263

  Fly  1148 PLSFTVPRIKSELFQDDLFPPTRITWSATLSSEDWFASNDKAAPKVSLK----PEGMETLSSIQ- 1207
            |:..|||| ||:||||||:|.|... ...|.:|:||...:.....:|||    |.....|..:: 
Zfish  1264 PIIMTVPR-KSDLFQDDLYPDTAGP-DPVLEAEEWFEGKNGEPILISLKHGYVPGKNRDLKVVKK 1326

  Fly  1208 -----------QVPAQPVKKPDHPQFGGQKSEYEINKQQEIQKSVSARMEFTT-------KLEQ 1253
                       :.|..| :||..||. .:|:|.   |.:|:.:.|.:..:..|       |||:
Zfish  1327 NVLDNKATKKVEEPTTP-QKPASPQL-TRKNEV---KLEELLREVKSLRDLVTLQDRRIAKLEE 1385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pod1NP_001245554.1 DUF1899 6..62 CDD:286094
WD40 <75..237 CDD:295369 19/81 (23%)
WD40 repeat 83..127 CDD:293791
WD40 repeat 132..166 CDD:293791 3/9 (33%)
WD40 repeat 174..210 CDD:293791 7/35 (20%)
WD40 repeat 217..260 CDD:293791 11/56 (20%)
WD40 repeat 267..294 CDD:293791 7/26 (27%)
WD40_4 341..384 CDD:292916 11/59 (19%)
DUF1899 808..866 CDD:286094 18/62 (29%)
WD40 843..1116 CDD:295369 91/276 (33%)
WD40 repeat 884..923 CDD:293791 10/39 (26%)
WD40 repeat 937..973 CDD:293791 11/35 (31%)
WD40 repeat 979..1016 CDD:293791 16/36 (44%)
WD40 repeat 1024..1064 CDD:293791 11/39 (28%)
WD40 repeat 1071..1094 CDD:293791 11/22 (50%)
WD40_4 1146..1189 CDD:292916 20/42 (48%)
coro1cbXP_017211752.2 WD40_4 927..1389 CDD:330497 147/471 (31%)
WD40 repeat 955..997 CDD:293791 13/43 (30%)
WD40 repeat 1003..1047 CDD:293791 12/43 (28%)
WD40 repeat 1052..1089 CDD:293791 11/36 (31%)
WD40 repeat 1097..1132 CDD:293791 15/34 (44%)
WD40 repeat 1140..1180 CDD:293791 11/40 (28%)
WD40 repeat 1187..1228 CDD:293791 20/40 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D179930at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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