DRSC/TRiP Functional Genomics Resources

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Protein Alignment pod1 and coro1ca

DIOPT Version :10

Sequence 1:NP_001245554.1 Gene:pod1 / 31620 FlyBaseID:FBgn0029903 Length:1266 Species:Drosophila melanogaster
Sequence 2:NP_958452.1 Gene:coro1ca / 317741 ZFINID:ZDB-GENE-030114-6 Length:474 Species:Danio rerio


Alignment Length:513 Identity:159/513 - (30%)
Similarity:253/513 - (49%) Gaps:81/513 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KASKYKNAAPIVPKAEACVREICVGSYQTYGNNIAASGAFMAFNWEHT--------GSSVAVLPL 62
            :.||:::......|.:.|..:|.|       :.:....||.|.|.:..        |.:..||||
Zfish     7 RQSKFRHVFGQAVKNDQCYDDIRV-------SRVTWDSAFCAVNPKFVALIVEASGGGAFMVLPL 64

  Fly    63 DDCGRKSKTMPLLHGHTDTVTDLKFSPFHDGLLATASQDCLVKIWHIPEKGLEQSLSDPEAIFSH 127
            ...||..|..|.:.|||..|.|:.:.|.:|.::|:.|:||.|.:|.|||.||..|:|:|..:...
Zfish    65 HKTGRIDKAYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLVTSMSEPVVVLEG 129

  Fly   128 KQRRVETVGFHPTADGLMYSTAAGC---VALFDLSTQKEIFS-NNEHPEVIQSASWREDGSVLAT 188
            ..:||..|.:||||..::.|  |||   :.::::.|.:.:.: .:.||::|.|..|..:||::.|
Zfish   130 HSKRVGVVTWHPTARNVLLS--AGCDNMIIIWNVGTGESMITLEDHHPDIIYSVCWNRNGSLICT 192

  Fly   189 SCKDKNVRIFDPRAAGSPIQLTAE---SHQSIKDSRVVWLGNQHRILTTGFDAARLRQVIIRDVR 250
            :||||.:|:.|||..    ::.||   :|:..:..|.::| :..::.||||.....||:.:.|..
Zfish   193 ACKDKKIRVIDPRKE----EIIAEKDKAHEGARPMRAIFL-SDGKVFTTGFSRMSERQLALWDPE 252

  Fly   251 NFNTPEKTLELDCSTGILMPLFDPDTNMLFLAGKGDTTINYLEITDKDPYLIEGLRH------TG 309
            |.:.|....|:|.|.|:|:|.:|||||:::|.||||::|.|.||||:.|::     |      |.
Zfish   253 NIDEPVAVHEMDTSNGVLLPFYDPDTNVVYLCGKGDSSIRYFEITDEAPFV-----HYLNTFTTK 312

  Fly   310 EQTKGACLVPKRALKVMEAEVNRVLQLTSNMVIPIMYQVPRKTYRD-FHADLYPETTGYKTELVA 373
            |..:|...:|||.|.|.:.|:.|..:|......||:..||||:  | |..||||:|.|....|.|
Zfish   313 EPQRGMGYMPKRGLDVNKCEIARFYKLHERKCEPIIMTVPRKS--DLFQDDLYPDTAGPDAPLEA 375

  Fly   374 GEWLNGSNQAVPKMSLDPAKREHGDEPIIIHRGNLSDFVKNLENQRAKSNTTGKPNQQAKRNDNE 438
            .||..|.|.....:||     :||..|                         || |:..|     
Zfish   376 EEWFEGKNGDPVLISL-----KHGYIP-------------------------GK-NRDLK----- 404

  Fly   439 HFVMLNTGNNFEEKNGNDNSNESNGKKSTPSQSQPDGECSELIRKFEAKYKVDSEKEK 496
             .|..|..:|...||..:.:.......|||| .:.:.:..|::::.::..::.|.:||
Zfish   405 -VVKKNILDNKMSKNTENTTPAHKTATSTPS-IKSEAKLEEVLKEIKSLRELVSSQEK 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pod1NP_001245554.1 DUF1899 3..67 CDD:462645 15/68 (22%)
WD40 37..>389 CDD:475233 131/373 (35%)
WD40 repeat 83..127 CDD:293791 17/43 (40%)
WD40 repeat 132..166 CDD:293791 11/36 (31%)
WD40 repeat 174..210 CDD:293791 14/35 (40%)
WD40 repeat 217..260 CDD:293791 11/42 (26%)
WD40 repeat 267..294 CDD:293791 14/26 (54%)
WD40 809..>1193 CDD:475233
WD40 repeat 884..923 CDD:293791
WD40 repeat 937..973 CDD:293791
WD40 repeat 979..1016 CDD:293791
WD40 repeat 1024..1064 CDD:293791
WD40 repeat 1071..1094 CDD:293791
coro1caNP_958452.1 WD40 9..471 CDD:475233 159/511 (31%)
WD40 repeat 37..79 CDD:293791 13/41 (32%)
WD 1. /evidence=ECO:0000255 79..119 18/39 (46%)
WD40 repeat 85..129 CDD:293791 17/43 (40%)
WD 2. /evidence=ECO:0000255 129..169 12/41 (29%)
WD40 repeat 134..171 CDD:293791 11/38 (29%)
WD 3. /evidence=ECO:0000255 173..212 16/42 (38%)
WD40 repeat 179..214 CDD:293791 15/38 (39%)
WD 4. /evidence=ECO:0000255 216..259 12/43 (28%)
WD40 repeat 222..262 CDD:293791 11/40 (28%)
WD 5. /evidence=ECO:0000255 264..304 22/44 (50%)
WD40 repeat 269..310 CDD:293791 20/45 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 415..437 6/22 (27%)
Blue background indicates that the domain is not in the aligned region.

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