DRSC/TRiP Functional Genomics Resources

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Protein Alignment pod1 and Coro1c

DIOPT Version :9

Sequence 1:NP_001245554.1 Gene:pod1 / 31620 FlyBaseID:FBgn0029903 Length:1266 Species:Drosophila melanogaster
Sequence 2:NP_035909.2 Gene:Coro1c / 23790 MGIID:1345964 Length:474 Species:Mus musculus


Alignment Length:460 Identity:150/460 - (32%)
Similarity:241/460 - (52%) Gaps:51/460 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KASKYKNAAPIVPKAEACVREICVGSYQTYGNNIAASGAFMAFNWEHT-GSSVAVLPLDDCGRKS 69
            :.||:::......|.:.|..:|.|.......:..|.:..|:|...|.: |.:..||||...||..
Mouse     6 RQSKFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTGRID 70

  Fly    70 KTMPLLHGHTDTVTDLKFSPFHDGLLATASQDCLVKIWHIPEKGLEQSLSDPEAIFSHKQRRVET 134
            |:.|.:.|||..|.|:.:.|.:|.::|:.|:||.|.:|.|||.||..||::|..|.....:||..
Mouse    71 KSYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILEGHSKRVGI 135

  Fly   135 VGFHPTADGLMYSTAAGC---VALFDLSTQKEIFS-NNEHPEVIQSASWREDGSVLATSCKDKNV 195
            |.:||||..::.|  |||   :.::::.|.:.:.: ::.|.::|.:.||..:||::.|:.|||.|
Mouse   136 VAWHPTARNVLLS--AGCDNAIIIWNVGTGEALINLDDMHSDMIYNVSWSRNGSLICTASKDKKV 198

  Fly   196 RIFDPRAAGSPIQLTAE---SHQSIKDSRVVWL--GNQHRILTTGFDAARLRQVIIRDVRNFNTP 255
            |:.|||..    ::.||   :|:..:..|.::|  ||   :.||||.....||:.:.:.:|...|
Mouse   199 RVIDPRKQ----EIVAEKEKAHEGARPMRAIFLADGN---VFTTGFSRMSERQLALWNPKNMQEP 256

  Fly   256 EKTLELDCSTGILMPLFDPDTNMLFLAGKGDTTINYLEITDKDPYLIEGLRH------TGEQTKG 314
            ....|:|.|.|:|:|.:||||::::|.||||::|.|.||||:.||:     |      :.|..:|
Mouse   257 IALHEMDTSNGVLLPFYDPDTSIIYLCGKGDSSIRYFEITDESPYV-----HYLNTFSSKEPQRG 316

  Fly   315 ACLVPKRALKVMEAEVNRVLQLTSNMVIPIMYQVPRKTYRD-FHADLYPETTGYKTELVAGEWLN 378
            ...:|||.|.|.:.|:.|..:|......||:..||||:  | |..||||:|.|.:..|.|.||..
Mouse   317 MGYMPKRGLDVNKCEIARFFKLHERKCEPIIMTVPRKS--DLFQDDLYPDTAGPEAALEAEEWFE 379

  Fly   379 GSNQAVPKMSLDPAKREHGDEP-----IIIHRGNLSDFVKNLENQRA-------KSNTTGKPNQQ 431
            |.|.....:||     :||..|     :.:.:.|:.| .|...|:::       |...|.....:
Mouse   380 GKNADPILISL-----KHGYIPGKNRDLKVVKKNILD-SKPAANKKSELSCAPKKPTDTASVQNE 438

  Fly   432 AKRND 436
            ||.::
Mouse   439 AKLDE 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pod1NP_001245554.1 DUF1899 6..62 CDD:286094 13/56 (23%)
WD40 <75..237 CDD:295369 59/170 (35%)
WD40 repeat 83..127 CDD:293791 18/43 (42%)
WD40 repeat 132..166 CDD:293791 11/36 (31%)
WD40 repeat 174..210 CDD:293791 14/35 (40%)
WD40 repeat 217..260 CDD:293791 12/44 (27%)
WD40 repeat 267..294 CDD:293791 13/26 (50%)
WD40_4 341..384 CDD:292916 20/43 (47%)
DUF1899 808..866 CDD:286094
WD40 843..1116 CDD:295369
WD40 repeat 884..923 CDD:293791
WD40 repeat 937..973 CDD:293791
WD40 repeat 979..1016 CDD:293791
WD40 repeat 1024..1064 CDD:293791
WD40 repeat 1071..1094 CDD:293791
WD40_4 1146..1189 CDD:292916
Coro1cNP_035909.2 DUF1899 6..63 CDD:286094 13/56 (23%)
PTZ00421 8..471 CDD:173611 150/458 (33%)
WD40 repeat 36..78 CDD:293791 13/41 (32%)
WD40 75..300 CDD:295369 85/233 (36%)
WD 1 78..118 18/39 (46%)
WD40 repeat 84..128 CDD:293791 18/43 (42%)
WD 2 128..168 12/41 (29%)
WD40 repeat 133..170 CDD:293791 11/38 (29%)
WD 3 172..202 12/29 (41%)
WD40 repeat 178..213 CDD:293791 15/38 (39%)
WD 4 215..249 11/36 (31%)
WD40 repeat 221..260 CDD:293791 12/41 (29%)
WD 5 263..303 22/44 (50%)
WD40 repeat 268..309 CDD:293791 20/45 (44%)
WD40_4 343..385 CDD:292916 20/43 (47%)
Mt_ATP-synt_D <429..>474 CDD:283519 3/15 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D179930at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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