DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment C3G and efc25

DIOPT Version :10

Sequence 1:NP_572350.2 Gene:C3G / 31618 FlyBaseID:FBgn0259228 Length:1571 Species:Drosophila melanogaster
Sequence 2:NP_596123.1 Gene:efc25 / 2540248 PomBaseID:SPBC336.03 Length:987 Species:Schizosaccharomyces pombe


Alignment Length:1120 Identity:209/1120 - (18%)
Similarity:344/1120 - (30%) Gaps:423/1120 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   721 SMREFRTST---QTTDYSVQS-----STKSSSSNSEIAFSISESTAVGSSSEYQQISQLVSHSQR 777
            |.:.|.||.   .|..||..|     |.||..|.|.::.|.:.|:...:.|.||...        
pombe    13 SRQGFETSVSKPSTPSYSTYSLSPTFSDKSVLSPSTMSDSYALSSTYTAGSSYQNGE-------- 69

  Fly   778 HISSSSSSCTTTTTSSSTTTGY----GS-----SEVEQLQQQQQQQTTTTP-------------- 819
              |....|..|.::..|:|:.:    ||     |....|.:|...::..||              
pombe    70 --SDYFGSLPTPSSDKSSTSPFPYLKGSFDDRFSSTHSLTRQPSPRSPLTPLKGNTRASPEIRYV 132

  Fly   820 ADLAPALPPKSIQRSSLTRHDSPGVGDELDEVQSSSGWASHRSSQSEVAELRQLSPLHHLNHHP- 883
            :|..|...|....::|:  |..|..|..:..|:::...:...||.|.:.....|.|.....:.| 
pombe   133 SDFTPPSSPFEDMQASV--HSLPLSGCSIGPVRTNHSSSLSNSSNSLLQTESSLRPNSSFVNSPF 195

  Fly   884 ------------------------------HTASA------------------------GQLQQW 894
                                          |..||                        .|...:
pombe   196 FPLPSSDDLFLNDRVINLFLFYEKFSYLFTHLLSAIKSRDALSIPSLVLSLQEELFNLCQQTGTF 260

  Fly   895 HSKHHSLIEG--------------------------------------PRLQLAG---------- 911
            :...|:|::.                                      ||||.:.          
pombe   261 YLLQHNLLQNFEFENPIKLHFDKIIPYFSRLTVLTFSNRAFIFPDHTFPRLQQSAEDFLYHLQFF 325

  Fly   912 -----------------------------------SGSCSAFDQRHLDQEPPPLPIKKKHILAYM 941
                                               |...||:..|.|:   |.||...|.:...:
pombe   326 FTLCANNSLYLSRFCYYPSFVPNTPFGGKWTNNGLSAVSSAYRTRLLE---PCLPELDKCVWFLL 387

  Fly   942 EICSASTRSIEQHRHTMHACNISRNI-SHSQ---------TMNIMPMSKELSPELEMPPALPPKN 996
            :.|.....:........:...|...| |||:         .|:|. ..|:|| |.|.......::
pombe   388 KNCDEFIENFSDFADEEYVFEICSTITSHSEQIFNKLESWDMSIY-FDKDLS-ECEQATNFAVQS 450

  Fly   997 Y---KQR---KATSMVAS---------------PTLQPVIVTTPPPSPKPTLGENGSTGRPDSRM 1040
            |   |||   ..|.:|.|               ||:...|...     ..||.||          
pombe   451 YFVTKQRCYDLLTDLVCSSQDLMMEHSNDFSTMPTMIASIAVA-----FQTLFEN---------- 500

  Fly  1041 ATVCEELNDAVASEDAMPEPRSPVLD---SNENVSAVDD-------GQTFYCHSHQLPAAEMEMS 1095
              ||:.|....|..|.|.|..:...:   ||.|.:..|:       |.|....|....|.. |||
pombe   501 --VCDFLKVRAALVDEMQELATKEFENKFSNANTAKDDEPARQTNKGTTRISRSSDFTAVS-EMS 562

  Fly  1096 EDASSADNQPITTPQVLEEQEEPTAESRPLVAVHESVKPANVDEDEEAERADMLINMLEEVNITR 1160
            :|..:...                                               |.|:.:.:..
pombe   563 KDTLTLGR-----------------------------------------------NSLQSILMLD 580

  Fly  1161 YLILKKREEDGPEVKGGYIDALIVHASRVQKVADNA-FCEAFITTFRTFIQPIDVIEKLTHRYTY 1224
            .|:..|..:....||||.:.||:.:.  ||.|..|. |..:|:.|::||..|             
pombe   581 NLLTNKVVQSDNNVKGGTLPALVHYL--VQNVHLNKDFRHSFLLTYKTFTTP------------- 630

  Fly  1225 FFCQVQDNKQKAAKETFALLVRVVNDLTSTDLTS-------------------QLLSLLVE--FV 1268
                         :|.|.|||.:.::|....|.:                   .:::|.|:  |.
pombe   631 -------------QELFTLLVILFHELPPPGLDATAYSSWEKGDNFVTKKNVCTVMNLWVQKYFF 682

  Fly  1269 YQLVCSGQLYLAKLLRNKFVEKVT----------------------------LYKEP-------K 1298
            ..|.....|||...:|....:.|.                            |...|       .
pombe   683 EDLKARNTLYLISEMRTFLRDHVVPSFHIGSVILSEIDNLWTEEPPDSLTQRLLSSPMATFISLN 747

  Fly  1299 VYGFVGELGGAGSVGGAGIAGSGGCSGTAGGGNQPSLLDLKSLEIAEQMTLLDAELFTKIEIPEV 1363
            ||.:..|                                    |.|.|||||:.:...:|...| 
pombe   748 VYAYTPE------------------------------------EFASQMTLLEFDYLKQIPSRE- 775

  Fly  1364 LLFAKDQCEEKSPNLNKFTEHFNKMSYWARSKILRLQDAKEREKHVNKFIKIMKHLRKMNNYNSY 1428
            .:|......:....:..:....|..:||..:.||..::.|.|...::.||:.......:.|:::.
pombe   776 WIFRSWVSRDSRSAVRNYINFSNCFTYWIINCILEKKNTKARTAVISFFIQTAYKCLSLQNFSTL 840

  Fly  1429 LALLSALDSGPIRRLEWQKGITEEVRSFC-----ALIDSSSSFRAYRQALAETNPPCIPYIGLIL 1488
            ::::|||:|.||.||.....:.:.....|     .::::..:|..||..|.:...||:|::|:||
pombe   841 MSIVSALNSAPIYRLHAAYKLVKAEDIICLSGLREIVETKKNFSTYRALLRKAELPCVPFLGVIL 905

  Fly  1489 QDLTFVHVGNQDYL--SKGVINFSKRWQQYNIIDNMKRFKKCAYPFRRNERIIRFFDNFKDFMGE 1551
            .||||:..||.|.|  |..:::|:||.:..:::.::.||:..:|..:.|..:..:..:...|:.:
pombe   906 SDLTFIDEGNPDVLDSSPHLLSFNKRHRLADVVADVCRFQSSSYEMQSNTDLQSYILHRCRFVNQ 970

  Fly  1552 E--EMWQISEKIKPR 1564
            :  .::..|..::||
pombe   971 DLSYLFDKSLSLEPR 985

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C3GNP_572350.2 RasGEFN 1170..1306 CDD:214571 36/192 (19%)
RasGEF 1335..1558 CDD:238087 56/231 (24%)
efc25NP_596123.1 RasGEF_N 593..700 CDD:459873 31/134 (23%)
RasGEF 755..932 CDD:459872 50/177 (28%)

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