DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment C3G and pxf-1

DIOPT Version :9

Sequence 1:NP_572350.2 Gene:C3G / 31618 FlyBaseID:FBgn0259228 Length:1571 Species:Drosophila melanogaster
Sequence 2:NP_001023389.1 Gene:pxf-1 / 177894 WormBaseID:WBGene00004254 Length:1470 Species:Caenorhabditis elegans


Alignment Length:1191 Identity:233/1191 - (19%)
Similarity:394/1191 - (33%) Gaps:456/1191 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   517 PMRG-SHSTESILRDT---------------SPPPKPPLPNR-----ASNPPPLPPK--RRSQPS 558
            |.|| .||.|.:.:.|               .|||.||.|.|     |..|.||||:  .|:.|.
 Worm   143 PPRGIHHSGEPVHQKTPRKSAPNMSVDSIAMPPPPVPPRPLRLPQTAAKGPAPLPPRGLPRTYPL 207

  Fly   559 ASAGTVGVGCSSSTSTSNQASPLPYAQSHNISLNSDLDCSSNISLLNYGVDRLSVRSRSPDENSQ 623
            .....:....|||::||       |...|.                    .::.:...|.||::.
 Worm   208 DFPVDIPTTSSSSSNTS-------YNDQHR--------------------SQVYLNGLSADEDTL 245

  Fly   624 CSFDSALNHSREEEDQQQQHQHLRSFPKLAAMMDEDMDKMVSYSAAIDDKTQTPLSTGGGIAGVA 688
            .    .:.|.||:                              |.::..:.|..:||...:    
 Worm   246 V----RVKHRREK------------------------------SNSVGGQAQNGISTARRL---- 272

  Fly   689 GGTGGAGEGVAAAASGDGETNSN--------------RHSNESGFVSMREFRTSTQTTDYSVQS- 738
                 .|...|::.:.:|||.||              :.|:..||:.:|:          ||:. 
 Worm   273 -----RGRSTASSTTTEGETASNEGADSDEDEGSMPSQESSSGGFMDLRD----------SVREC 322

  Fly   739 -STKSSSSNSE-----IAF--SISESTAVGSSSEYQQISQLV------------SHSQRHISSS- 782
             ..:.|..|||     :.|  .:|...|:..|.:.|...::|            :|:::..|.| 
 Worm   323 LEKEPSERNSEDLAVLLDFMQHMSAFAALPMSIKRQLCLKMVFAVVNDAGTVVLAHNEKLDSWSV 387

  Fly   783 -SSSCTTTTTSSSTTTGY--GSS---EVEQLQQQQQQQTTTTPADLAPALPPK----SIQRSSLT 837
             .:.|......|.....|  |.|   |.....|....:..|...|....|...    ||. |::.
 Worm   388 IVNGCVEVVKPSGERVEYKLGDSFGAEPTPATQIHIGEMRTMVDDCEFVLVEHRDFCSIM-STIG 451

  Fly   838 RH---DSPGV-GDELDEVQ-----SSSGWASHRSSQSEVAELRQLSPLHHL------NHHPH--- 884
            .|   |..|: |:.:.||:     :..|....:....::        :|||      |..||   
 Worm   452 DHIEKDRDGLTGEVVSEVERRTVGTHCGQVLIKGKPDKL--------IHHLVDERDHNVDPHYVD 508

  Fly   885 -------------TASAGQLQQWHS----------------KHH-----------SLIE------ 903
                         |....:|..|.:                .:|           :|:|      
 Worm   509 DFLLTYRVFIRDPTTIFEKLMLWFADSIYRDKVARLVLLWVNNHFNDFETNDEMWNLLERFEGAL 573

  Fly   904 ---GPRLQLAGSG-SCSAFDQRHLDQEPPPLPIKKK-------------------HILAYMEICS 945
               |...||:... :||      :..:|..:.:.::                   ::.......|
 Worm   574 ERDGMHSQLSLLNIACS------VKAKPRQVILTRRKDDKMMMRLVGGQESGNSVYVAEVFPDTS 632

  Fly   946 ASTRSI----------EQHRHTMHACNISRNISHSQTMNIMPMS-----KELSPELEMPPALPPK 995
            |:...:          :|....:.|......::.|.::.:|..:     ||...::|..   .||
 Worm   633 AAREGVKRADEMLEVNQQSAKYLSAKKAEDLLTGSLSLTLMLKNNVLGYKETIGKIEHN---KPK 694

  Fly   996 NYKQRKATSMVASPTLQPVIVTTPPPSPKPTLGENGSTGRPDSRMATVCEELNDAVASEDAMPEP 1060
            |...|....:       |:::    |..|.::     ||:..|           ..:|:..|.|.
 Worm   695 NGTSRSGAGI-------PMVI----PVHKTSI-----TGKKSS-----------TTSSKSGMMEK 732

  Fly  1061 RSPVLDSNENVSAVDDGQTFYCHSHQLPAAEMEMSEDA--SSADNQPI-TTPQV--LEEQEEPTA 1120
            ...:|.|::..|                   |:.:::|  ||||.:|. :.|.:  :.:...|..
 Worm   733 LMTILKSSKEDS-------------------MDFTDEAKISSADLRPSRSNPDITSISQYYGPVR 778

  Fly  1121 ESRP--LVAVH---ESVKPANVDEDEEAERADMLINMLEEVNITRYLILKKREEDGPEVKGGYID 1180
            ...|  ::.::   ::.|...|.::..|:....|  .|:|.|:|        .|..||.      
 Worm   779 SECPEHVLKIYRNDQTFKYLPVYKETSAQNVVQL--ALQEFNMT--------AEGSPEW------ 827

  Fly  1181 ALIVHASRVQKVADNAFCEAFIT------TFRTFIQPIDVIEKLTHRYTYFFCQVQDNKQKAAKE 1239
                           :.||..:|      ..|...|..::.|::.....|:   :::|.:.    
 Worm   828 ---------------SLCECTVTIDGVIKQRRLPPQMENLAERIALNSRYY---LKNNSRS---- 870

  Fly  1240 TFALLVRVVNDLTSTDLTSQLLSLLVEFVYQLVCSGQLYLAKLLRNKFVEKVTLYKEPKVYGFVG 1304
                     ..|...:|..:||                                 ||.       
 Worm   871 ---------EPLVPDELAPELL---------------------------------KEA------- 886

  Fly  1305 ELGGAGSVGGAGIAGSGGCSGTAGGGNQPSLLDLKSLEIAEQMTLLDAELFTKIEIPEVL--LFA 1367
                                       |..||.|.:..:|.|:||.|..:|:.||..|.|  ||.
 Worm   887 ---------------------------QTQLLSLNAQVVAAQLTLQDFSVFSAIEPTEFLDNLFK 924

  Fly  1368 KDQCEEKSPNLNKFTEHFNKMSYWARSKILRLQDAKEREKHVNKFIKIMKHLRKMNNYNSYLALL 1432
            .|. :..||.|.:|.:.||:..:|..::|...:..::|.|.:.||||:.::.|.:.|:||..|::
 Worm   925 LDS-KYGSPKLEEFEQLFNREMWWVATEICTERHVQKRAKLIKKFIKVARYCRDLRNFNSMFAIM 988

  Fly  1433 SALDSGPIRRL--EWQKGITEEVR---SFCALIDSSSSFRAYRQALAET--NPPCIPYIGLILQD 1490
            |.||...:|||  .|::..::.:|   ....|:|.|.:...|||.|||.  .||.:|...:|.:|
 Worm   989 SGLDKPAVRRLHSSWERVSSKYIRMLDEIHQLVDPSRNMSKYRQHLAEVAQEPPVVPIYPVIKKD 1053

  Fly  1491 LTFVHVGNQDYLSKGVINFSK 1511
            |||.|.||..| |:.:|||.|
 Worm  1054 LTFAHDGNATY-SEKLINFEK 1073

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C3GNP_572350.2 RasGEFN 1170..1306 CDD:214571 16/141 (11%)
RasGEF 1335..1558 CDD:238087 69/186 (37%)
pxf-1NP_001023389.1 CAP_ED 45..131 CDD:237999
cNMP 348..458 CDD:197516 21/110 (19%)
RasGEFN 479..592 CDD:214571 18/126 (14%)
PDZ_signaling 595..662 CDD:238492 5/66 (8%)
PDZ_GEF_RA 782..867 CDD:176380 19/118 (16%)
RasGEF 890..1118 CDD:238087 69/186 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2063
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.940

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