DRSC/TRiP Functional Genomics Resources

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Protein Alignment shf and TNR

DIOPT Version :10

Sequence 1:NP_001284963.1 Gene:shf / 31617 FlyBaseID:FBgn0003390 Length:460 Species:Drosophila melanogaster
Sequence 2:NP_003276.3 Gene:TNR / 7143 HGNCID:11953 Length:1358 Species:Homo sapiens


Alignment Length:166 Identity:51/166 - (30%)
Similarity:69/166 - (41%) Gaps:19/166 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   285 PECSLKCGKNGYCNEHHICKCNVGYTGQYCETAFCFPQCLNGGNCTAPSVCTCPEGYQGTQCEGG 349
            |.||   |...:..|...|.||.|:.|:.|...:|...|.:.|.| ....|.|...|.|..|...
Human   173 PHCS---GHGNFSFESCGCICNEGWFGKNCSEPYCPLGCSSRGVC-VDGQCICDSEYSGDDCSEL 233

  Fly   350 ICKDKCLNGGKCIQKDKCQCSKGYYGLRCEYSKCVIPCKNEGRCIGNNLCRCPNGLRGDHCEIGR 414
            .|...|.:.|.|:. .:|.|.:.|.|..|...:|...|..:||| .|..|.|..|..|:.|  |:
Human   234 RCPTDCSSRGLCVD-GECVCEEPYTGEDCRELRCPGDCSGKGRC-ANGTCLCEEGYVGEDC--GQ 294

  Fly   415 KQ-RSIC----KCRNGTCVSHKHCKCHPGFYGRHCN 445
            :| .:.|    :|..|.||      |..|:.|..|:
Human   295 RQCLNACSGRGQCEEGLCV------CEEGYQGPDCS 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shfNP_001284963.1 WIF 120..258 CDD:470637
TNRNP_003276.3 EGF_Tenascin 203..231 CDD:376143 8/28 (29%)
C_rich_MXAN6577 207..312 CDD:469225 33/109 (30%)
EGF_Tenascin 235..261 CDD:480934 8/26 (31%)
fn3 328..398 CDD:394996
fn3 416..496 CDD:394996
fn3 507..583 CDD:394996
FN3 <566..919 CDD:442628
fn3 954..1026 CDD:394996
FN3 1042..1127 CDD:238020
FReD 1133..1342 CDD:238040
Blue background indicates that the domain is not in the aligned region.

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