DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shf and Ten-a

DIOPT Version :9

Sequence 1:NP_001284963.1 Gene:shf / 31617 FlyBaseID:FBgn0003390 Length:460 Species:Drosophila melanogaster
Sequence 2:NP_001162732.2 Gene:Ten-a / 32183 FlyBaseID:FBgn0267001 Length:3387 Species:Drosophila melanogaster


Alignment Length:606 Identity:133/606 - (21%)
Similarity:200/606 - (33%) Gaps:186/606 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 CLVKWLYLVLIVHTLL------------------CIGQLECRQQHHNRN----NNNNNRRADSSS 50
            ||...|..|.:|.|.:                  ||...:.:.|.|:..    .:|....|.:..
  Fly   540 CLSIALIFVSVVLTAMLAYFAAVSSMKPNMDSTNCILVQDVKSQPHDLRGGLAKSNEKGVATAFP 604

  Fly    51 SEEG-------HGNTSDGLDN-FADQDASFVG------------HG-HQP--------RRGQRKK 86
            :||.       ||....||.| .|....|..|            |. :||        ...|...
  Fly   605 TEESIQTSTSDHGQNGHGLMNPSAGSGGSNSGIQQQLLLQQQQPHSINQPLTPLDATNTHLQDHH 669

  Fly    87 QQGGGGGGSGGGGGNGGGGGSRHNRNEESGISLWINEQQLKMLTALYFPQGYSERLYAIHNSRVT 151
            |...||...||.||.|..||...|.....|:...:.:|....|.. :..|....:|..:...:..
  Fly   670 QLTYGGALPGGVGGIGMSGGGIMNGGLNGGLGGQLMQQPGGGLNG-HHHQALQPQLGGVVELKEF 733

  Fly   152 NDLRDTTL--YNFLVI------PSEVNYVNFTWKSGRRKYFYDFDRLQTMDESILKAPTLSIRKS 208
            |:....|:  |.|..:      |:.:.: |||...|  .:|..:.| :.:..|:.:...:...|.
  Fly   734 NEAYHATIPAYQFWTLEFRNKHPAFIRF-NFTLPWG--AHFAVYSR-RNVAPSVTQHDFVEFIKG 794

  Fly   209 GRIPQ--EQKNFSIFLPCTGNS----------------------------SGTASFNVGLKIQT- 242
            ||:..  ..:..|.....||..                            ..:.|::|...:.| 
  Fly   795 GRLDSHLRHRRSSANATTTGQDMELYRQDKDQSAESAQDQDSEQDESRSFDSSESYDVETPLDTA 859

  Fly   243 -RHNKPLSGTPIRLNFKKECAHRGV--YDIDASN---------PTSL--------------TTLQ 281
             :|.:.: |.|......|..|..|:  .|:||..         .|.|              .:|.
  Fly   860 KQHLQRI-GKPQSHWVNKRSAGDGLPALDVDAMTVNVSLLQYLDTGLWFISVYNDELVAHSVSLL 923

  Fly   282 APDPE-----CSLKCGKNGYCNEHHI--CKCNVGYTGQYCETAFCFPQCLNGGNCTAPSVCTCPE 339
            |.:.|     |...|...|.|   ::  |.|..||.|..|..:.|...|...|: ....||.|.|
  Fly   924 AEEAEGVSTTCPNDCSGRGSC---YLGKCDCIDGYQGVDCSKSVCPVLCSAHGH-YGGGVCHCEE 984

  Fly   340 GYQGTQCE--GGICK-DKCLNGGKCIQKDKCQCSKGYYGLRCEYSKCVIP-CKNEGRCIGNNLCR 400
            |::|.:|:  .|.|: ..|.:.|:||: .:|.|.:|:.|..|:...|:.| |...|.|:... |.
  Fly   985 GWKGAECDIPVGECEVPNCSSHGRCIE-GECHCERGWKGPYCDQHDCLDPLCSGHGTCVAGQ-CY 1047

  Fly   401 CPNGLRGDHC----------------------EIGRKQRSICKC-------------------RN 424
            |..|.:|:.|                      |.|:     |.|                   ||
  Fly  1048 CKAGWQGEDCGTIDQQVYQCLPGCSEHGTYDLETGQ-----CVCERHWTGPDCSQAVCSLDCGRN 1107

  Fly   425 GTCVSHKHCKCHPGFYGRHCN 445
            |.|.|.| |:|:.|:.|..|:
  Fly  1108 GVCESGK-CRCNSGWTGNLCD 1127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shfNP_001284963.1 WIF 137..258 CDD:280237 25/160 (16%)
Ten-aNP_001162732.2 EGF_2 934..960 CDD:285248 9/28 (32%)
Keratin_B2 998..1162 CDD:279797 35/138 (25%)
EGF_2 <1003..1025 CDD:285248 8/22 (36%)
EGF_2 1032..1057 CDD:285248 8/25 (32%)
EGF_2 <1071..1095 CDD:285248 4/28 (14%)
EGF_2 1101..1126 CDD:285248 10/25 (40%)
EGF_2 <1135..1157 CDD:285248
EGF_CA 1163..1192 CDD:238011
NHL 1622..1927 CDD:302697
NHL repeat 1675..1721 CDD:271320
NHL repeat 1745..1787 CDD:271320
NHL repeat 1802..1847 CDD:271320
NHL repeat 1864..1897 CDD:271320
RHS_repeat 2213..2250 CDD:283287
RhsA 2397..2958 CDD:225750
Rhs_assc_core 2939..3015 CDD:274730
Tox-GHH 3274..3349 CDD:292269
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1225
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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