DRSC/TRiP Functional Genomics Resources

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Protein Alignment shf and tncb

DIOPT Version :9

Sequence 1:NP_001284963.1 Gene:shf / 31617 FlyBaseID:FBgn0003390 Length:460 Species:Drosophila melanogaster
Sequence 2:NP_001299845.1 Gene:tncb / 30037 ZFINID:ZDB-GENE-980526-104 Length:1811 Species:Danio rerio


Alignment Length:205 Identity:69/205 - (33%)
Similarity:84/205 - (40%) Gaps:27/205 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   260 ECAHRGVYDIDASNPTSLTTLQAPDPEC-SLKCGKNGYCNEHHICK-----CNVGYTGQYCETAF 318
            :|..||    ...|.|..........:| .|.|.:|  ||.|..|.     ||:||:|:.|....
Zfish   290 DCFDRG----RCENGTCYCDEGFTGEDCGELTCPQN--CNHHGRCVNGQCICNIGYSGEDCSKLT 348

  Fly   319 CFPQCLNGGNCTAPSVCTCPEGYQGTQCEGGICKDKCLNGGKCIQKDKCQCSKGYYGLRCEYSKC 383
            |...|...|:| ....|.|..|::|..|....|.|.|...|.|: ..:|.|..||.|..|....|
Zfish   349 CLNDCSERGHC-FNGKCICDPGFEGEDCSLLSCPDNCNGRGHCV-NGECICGPGYEGDDCSELSC 411

  Fly   384 VIPCKNEGRCIGNNLCRCPNGLRGDHCEIGRKQRSIC--KCR-NGTCVSHKHCKCHPGFYGRHCN 445
            :..|.:.|||: |..|.|..|..|:.|.|     ..|  .|. .|.||..| |.||.||.|.|| 
Zfish   412 LNNCHDRGRCV-NGKCICKAGFAGEDCSI-----KTCPHDCHGRGECVDGK-CVCHDGFAGEHC- 468

  Fly   446 GRKR--RHVH 453
            |.|.  .|.|
Zfish   469 GIKTCPHHCH 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shfNP_001284963.1 WIF 137..258 CDD:280237
tncbNP_001299845.1 DnaJ <471..>544 CDD:333066 3/8 (38%)
fn3 689..760 CDD:306538
fn3 778..858 CDD:306538
fn3 868..948 CDD:306538
FN3 958..1047 CDD:238020
fn3 1050..1128 CDD:306538
fn3 1140..1215 CDD:306538
fn3 1231..1303 CDD:306538
fn3 1323..1400 CDD:306538
fn3 1410..1482 CDD:306538
fn3 1498..1570 CDD:306538
FReD 1589..1798 CDD:238040
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1225
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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