DRSC/TRiP Functional Genomics Resources

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Protein Alignment shf and Tnc

DIOPT Version :9

Sequence 1:NP_001284963.1 Gene:shf / 31617 FlyBaseID:FBgn0003390 Length:460 Species:Drosophila melanogaster
Sequence 2:NP_001356140.1 Gene:Tnc / 21923 MGIID:101922 Length:2110 Species:Mus musculus


Alignment Length:246 Identity:69/246 - (28%)
Similarity:98/246 - (39%) Gaps:61/246 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 KPLSGTPIRLNFKKECAHRGVYDIDASNPTSLTTLQAP---DPECSLKCGKNGYCNEHHICKCNV 307
            :|..|   ||:.:..|:.||.:..:..........:.|   :|:|...|...|.|.:.. |.|:.
Mouse   149 QPAEG---RLDTRPFCSGRGNFSAEGCGCVCEPGWKGPNCSEPDCPGNCNLRGQCLDGQ-CICDE 209

  Fly   308 GYTGQYCETAFCFPQCLNGGNCTAPSVCTCPEGYQGTQC-----------EGGICKD-------- 353
            |:||:.|....|...|.:.|.| ...||.|.|||.|..|           |.|:|.|        
Mouse   210 GFTGEDCSQLACPNDCNDQGRC-VNGVCVCFEGYAGPDCGLEVCPVPCSEEHGMCVDGRCVCKDG 273

  Fly   354 -------------KCLNGGKCIQKDKCQCSKGYYGLRCEYSKCVIPCKNEGRCIGNNLCRCPNGL 405
                         .|.|.|:|:: ::|.|.:|:.|..|....|...|.:.|||| |..|.|..|.
Mouse   274 FAGEDCNEPLCLNNCYNRGRCVE-NECVCDEGFTGEDCSELICPNDCFDRGRCI-NGTCYCEEGF 336

  Fly   406 RGDHC-EI-------GRKQRSICKCRNGTCVSHKHCKCHPGFYGRHCNGRK 448
            .|:.| |:       ||.|     |..|.||      |:.||.|..|:.::
Mouse   337 TGEDCGELTCPNDCQGRGQ-----CEEGQCV------CNEGFAGADCSEKR 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shfNP_001284963.1 WIF 137..258 CDD:280237 4/11 (36%)
TncNP_001356140.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 69..91
EGF_2 222..247 CDD:285248 10/25 (40%)
EGF_2 345..372 CDD:285248 11/37 (30%)
EGF_2 377..403 CDD:285248 69/246 (28%)
EGF_2 408..434 CDD:285248
EGF_2 468..496 CDD:285248
EGF_2 504..527 CDD:285248
EGF_2 533..558 CDD:285248
EGF_2 592..620 CDD:285248
FN3 624..710 CDD:238020
fn3 713..793 CDD:333790
FN3 804..891 CDD:238020
fn3 894..976 CDD:333790
fn3 986..1064 CDD:333790
fn3 1075..1147 CDD:333790
fn3 1169..1246 CDD:333790
fn3 1257..1336 CDD:333790
fn3 1348..1417 CDD:333790
fn3 1442..1519 CDD:333790
fn3 1530..1610 CDD:333790
fn3 1620..1699 CDD:333790
fn3 1711..1785 CDD:333790
fn3 1797..1869 CDD:333790
Fibrinogen_C 1889..2098 CDD:278572
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1225
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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