DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL17 and mrpl-22

DIOPT Version :9

Sequence 1:NP_001284961.1 Gene:RpL17 / 31613 FlyBaseID:FBgn0029897 Length:186 Species:Drosophila melanogaster
Sequence 2:NP_499340.1 Gene:mrpl-22 / 176482 WormBaseID:WBGene00012645 Length:260 Species:Caenorhabditis elegans


Alignment Length:129 Identity:26/129 - (20%)
Similarity:39/129 - (30%) Gaps:44/129 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 KAVIDQKECVPFRRFNGGVGRCAQAKQWKTTQGRWPK--------------KSAEFLLQLLRNAE 99
            |.|...||.|.|          :..:.|...|..|..              |:...|:..::.|:
 Worm   116 KEVFHCKESVHF----------SPKRMWAACQLVWKMNVDEAITQLDMQQLKACNLLMDTIKKAK 170

  Fly   100 ANADCKGLDADRLVVHH-----------IQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILTE 152
            :.|      ||...:.:           :|.|..:..||   .||...|.......|:.|.|.|
 Worm   171 SRA------ADEFHIEYPSQMYVADAFPVQSNIVKGARR---HAHDNWNTIRYRYIHIFVRLEE 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL17NP_001284961.1 PTZ00178 1..162 CDD:240306 26/129 (20%)
mrpl-22NP_499340.1 Ribosomal_L22 118..223 CDD:238205 23/123 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0091
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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