DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3168 and sv2a

DIOPT Version :9

Sequence 1:NP_001284957.1 Gene:CG3168 / 31612 FlyBaseID:FBgn0029896 Length:632 Species:Drosophila melanogaster
Sequence 2:XP_012825002.1 Gene:sv2a / 100379721 XenbaseID:XB-GENE-968429 Length:729 Species:Xenopus tropicalis


Alignment Length:703 Identity:174/703 - (24%)
Similarity:297/703 - (42%) Gaps:153/703 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 GTGPKQPEYQFAA-------DNRGYEP-DSHANGKQQDVERDAPDGGHGGHG------------- 108
            |....|.||...:       |:..|:| |.:..|...:.|..|......||.             
 Frog    33 GVDKMQDEYTKRSYTRFEEDDDDDYQPQDGYYRGDPLNDEEGASSDATEGHDEDDEIYEGEYQGI 97

  Fly   109 PPGKGGKGG------------------KGRKKSVPLPEPTAPIVANFERAIELCGYGKFHYILLA 155
            |.....||.                  :|::|     :....:...:|..::.||:|:|.:.|..
 Frog    98 PRADSMKGDHLANNQQLVTEFKDFNDLEGQRK-----KDKEELAQQYEVILQECGHGRFQWTLYF 157

  Fly   156 ICGLVSTSEEMDVISMSFILPSAECDLDLNTETKGWLNSIIFIGMMVGAYFWGSIADSFGRKKVL 220
            :.||...::.:::..:.|:|||||.|:.|:...||.|..|:::||||||:.||.:||..||::.|
 Frog   158 VLGLALMADGVEIFVVGFVLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGMADRIGRRQCL 222

  Fly   221 IVISFMNAFCIVASSFSQTYSFFMLFRFLNGAALGGSGPVIWSYFAEFQPKAKRGSMLSFMAAFW 285
            ::...:|:.....|||.|.|..|:..|.|:|..:|||.|:::|||:||..:.|||..||::..||
 Frog   223 LISLSVNSVFAFFSSFVQGYGTFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFW 287

  Fly   286 TFGNLFVASLAWLIIPRTIGFTTPY---FTYNSWRIFLLVCSLPS-FLVGFLLFYLPESPKFLLT 346
            ..|.::.:::||.|||. .|::...   :.::|||:|:|||:.|| |.:| .|..:||||:|.|.
 Frog   288 MIGGIYASAMAWAIIPH-YGWSFQMGSAYQFHSWRVFVLVCAFPSVFAIG-ALTTMPESPRFFLE 350

  Fly   347 RGKKDRALAIFRGIFVTNTKRRPDEYMVYD------LEVDEKLLESNGNVKNKYSRMISGMVDHS 405
            .||.|.|..:.:.:..||.:.:.....|:.      ::.|::|:|...:....:.|.:..:::.|
 Frog   351 NGKHDEAWMVLKQVHDTNMRAKGHPERVFSVTQIKTIKQDDELVEIQSDTGALHRRWMIKLLNLS 415

  Fly   406 RAL-------FKSPILRFTIVSITINFTFHIGYYGLLMWFPELFNRFEEYE-----KAFPDQSAG 458
            :.:       |.....|.|::.:.:.||....||||.:|||::....:..:     |.|.::|  
 Frog   416 QEVWANFHQCFAPEYRRITLMMMAVWFTMSFSYYGLTVWFPDMIKHLQNIDYASRTKYFHNES-- 478

  Fly   459 VCAVTDYVVNLAKE--------------------------------------QSN---------- 475
               |.::..|...|                                      .||          
 Frog   479 ---VNNFNFNFTLENQVHRKGEYHNDKFIGLKLKSVIFEDSLFTDCYFEDITSSNTFFKNCSFIR 540

  Fly   476 -------------------NGT-------C----SSDIPQS--VFMESLISLASALPANLLAILG 508
                               |.|       |    |.||..:  ::..|.:...:.||.|:::.|.
 Frog   541 TMFYNTDLFDYKFINSKFTNSTFLHSKEGCQLDFSDDINNAYMIYFVSFLGTLAVLPGNIVSALL 605

  Fly   509 MDMLGRKFFLIAGTMTAGICSALMYFVRSSVQNLVVSAIFSGAISAANAALDCLITEVFPTKLRA 573
            ||.:||...|...::.:.|....::|..|....:.:..:|.|...|:..|||.|..|::|:..|.
 Frog   606 MDKIGRLRMLAGSSVMSCISCFFLFFGNSESAMIALLCLFGGVSIASWNALDVLTVELYPSDKRT 670

  Fly   574 TGVAISMVAARLGGIIGNIVIAQLLDNYCPSPTFIVSGLLIGGGLMCLLLPNT 626
            |.........:|..::|..:....:......|..:.|..|..|..:.|.||.|
 Frog   671 TAFGFLNALCKLAAVLGISIFTSFVGVAKAVPILLASAALAVGSFLALKLPET 723

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3168NP_001284957.1 2A0115 149..598 CDD:273327 144/550 (26%)
MFS 154..623 CDD:119392 147/570 (26%)
sv2aXP_012825002.1 synapt_SV2 1..729 CDD:130366 174/703 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 163 1.000 Domainoid score I3917
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 294 1.000 Inparanoid score I2700
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D208328at33208
OrthoFinder 1 1.000 - - FOG0001322
OrthoInspector 1 1.000 - - mtm9375
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1933
SonicParanoid 1 1.000 - - X658
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.000

Return to query results.
Submit another query.