DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mcm6 and MCM3

DIOPT Version :9

Sequence 1:NP_511065.1 Gene:Mcm6 / 31603 FlyBaseID:FBgn0025815 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_199440.1 Gene:MCM3 / 834670 AraportID:AT5G46280 Length:776 Species:Arabidopsis thaliana


Alignment Length:853 Identity:245/853 - (28%)
Similarity:388/853 - (45%) Gaps:185/853 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 VKDEVGIRAQKLFQDFLEEFKEDGEIKYTRPAASLESPDRCTLEVSFEDVEKYDQNLATAIIEEY 77
            |.:|..:|.::.|..||:..       |.....:|....|..|.::..|:..:.:.:|:.|::..
plant     3 VPEETRLRHKRDFIQFLDSM-------YMEEIKALVHQKRHRLIINISDIHHHFREVASRILKNP 60

  Fly    78 YHIYPFLCQSVS--------NYVKD-RIGLKTQKDCYVAFTEVPTRHKVRDLTTSKIGTLIRISG 133
            .......|.:.:        .|:|: .:.|...:..:|:....|     |:|.:..||:::.:.|
plant    61 NEYMQSFCDAATEATRAIDPKYLKEGELVLVGFEGYFVSRVVTP-----RELLSDFIGSMVCVEG 120

  Fly   134 QVVRTHPVHPELVSGVFMCLDCQTEIRNVEQQFKFTN------------PTICRNPVCSNRKRFM 186
            .|.:...|.|::|..|..|          ....:|||            ||....|. .:.|..:
plant   121 IVTKCSLVRPKVVKSVHFC----------PSTGEFTNRDYRDITSHAGLPTGSVYPT-RDDKGNL 174

  Fly   187 LDVEKSL--FLDFQKIRIQETQAELPRGCIPRAVEIILRSELVETVQAGDRYDFTGTLIVVPDVS 249
            |..|..|  :.|.|.:.|||.......|.:||:|::|...:||::.:.|||            ||
plant   175 LVTEYGLCKYKDHQTLSIQEVPENAAPGQLPRSVDVIAEDDLVDSCKPGDR------------VS 227

  Fly   250 VLAGVGTRAENSSRHKPGEGMDGVTGLKALGMRELNYRMAFLACSVQATTARFGGTDLPMSEVTA 314
            |. |:       .:..||:....|.|:         :|...:|.::.          |...|..|
plant   228 VF-GI-------YKALPGKSKGSVNGV---------FRTILIANNIA----------LLNKEANA 265

  Fly   315 EDMKKQMTDAEWHKIYEMSKDRNLYQNLISSLFPSIYGNDEVKRGILLQQFGGVAKTTTEKTSLR 379
            ....||..|    .|..:::..:.:..|..||.|||||:..:|:.::|...|||.|.....|.||
plant   266 PIYTKQDLD----NIKNIARRDDAFDLLARSLAPSIYGHAWIKKAVVLLMLGGVEKNLKNGTHLR 326

  Fly   380 GDINVCIVGDPSTAKSQFLKQVSDFSPRAIYTSGKASSAAGLTAAVVRDEESFDFVIEAGALMLA 444
            ||||:.:|||||.||||.|:.:.:.:|.||.|:|:.||..||||||..|:|:.:..:||||::||
plant   327 GDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLA 391

  Fly   445 DNGICCIDEFDKMDQRDQVAIHEAMEQQTISIARAGVRATLNARTSILAAANPINGRYDRSKSLQ 509
            |.||.||||||||:.:|:|||||.|||||::||:||:.|:||||.|::||||||.|.||||.:..
plant   392 DKGIVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPT 456

  Fly   510 QNIQLSAPIMSRFDLFFILVDECNEVVDYAIARKIVDLH--------------------SNIEES 554
            :||.|...::|||||.||::|:.:..:|..|:..::.:|                    .|.|..
plant   457 KNIGLPDSLLSRFDLLFIVLDQMDAGIDSMISEHVLRMHRYKNDRGEAGPDGSLPYAREDNAESE 521

  Fly   555 V------------ERAYTREEVL------RYVTFAR-QFKPVISQEAGHMLVENYGHLRQRDTGT 600
            :            :|..|.::.|      :|:.:|: :..|.::.||...:.|.|..||...:.|
plant   522 MFVKYNQTLHGKKKRGQTHDKTLTIKFLKKYIHYAKHRITPKLTDEASERIAEAYADLRNAGSDT 586

  Fly   601 SGRSTWRITVRQLESMIRLSEAMAKLECSNRVLERHVKEAFRLLNKSIIRVEQPDIHLDDDEGLD 665
            ....|..||.|.||::|||:.|.||::.|:.|.:...:.|.:|:|.:|...|..:  :||.|..:
plant   587 KTGGTLPITARTLETIIRLATAHAKMKLSSEVTKADAEAALKLMNFAIYHQELTE--MDDREQEE 649

  Fly   666 M----------------------DDGIQHDIDMENNGAAANVDENNG--MDTSASGAVQKKKFTL 706
            .                      :||.::|        .||||....  |:.. ..:|::...|:
plant   650 RQREQAEQERTPSGRRGNQRRNNEDGAEND--------TANVDSETADPMEVD-EPSVEQFSGTV 705

  Fly   707 SFEDYKNLSTMLVLHMRAEE------ARCEVEGNDTGIKRSNVVTWYLEQVADQIESEDELISRK 765
            |....:....:...|||...      |..|...|:.|:..|..             |.||:::  
plant   706 SAARIETFERVFGQHMRTHRLDDISIADIETVVNNNGVGASRY-------------SADEIMA-- 755

  Fly   766 NLIEKLID 773
             |:|||.|
plant   756 -LLEKLQD 762

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm6NP_511065.1 MCM_N 25..109 CDD:379644 15/92 (16%)
MCM 113..649 CDD:214631 194/588 (33%)
MCM6_C 702..816 CDD:375690 18/78 (23%)
MCM3NP_199440.1 MCM_N 12..89 CDD:405270 13/83 (16%)
MCM 100..634 CDD:214631 195/592 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D266497at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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