DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mcm6 and Mcm2

DIOPT Version :9

Sequence 1:NP_511065.1 Gene:Mcm6 / 31603 FlyBaseID:FBgn0025815 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_001101343.2 Gene:Mcm2 / 312538 RGDID:1305577 Length:905 Species:Rattus norvegicus


Alignment Length:690 Identity:217/690 - (31%)
Similarity:352/690 - (51%) Gaps:113/690 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 VKDEVGIRAQKL-----FQDFLEEFKED-GEIKYTRPAASLESPDRCTLEVSFEDVEKYDQNLA- 70
            |::.|.:...:|     |::||....:. |...:....:.:...:|.:|.|::||:...:..|| 
  Rat   183 VREWVSMAGPRLEIHHRFKNFLRTHVDSHGHNVFKERISDMCKENRESLVVNYEDLAAREHVLAY 247

  Fly    71 --------------TAIIEEYYHIYPFLCQSVSNYVKDRIGLKTQKDCYVAFTEVPTRHKVRDLT 121
                          .|.:|....:|| ....::|::            :|..:.:|...::|.|.
  Rat   248 FLPEAPAELLQIFDEAALEVVLAMYP-KYDRITNHI------------HVRISHLPLVEELRSLR 299

  Fly   122 TSKIGTLIRISGQVVRTHPVHPELVSGVFMCLDCQTEI----RNVEQQFKFTNPTICRNPVCSNR 182
            ...:..|||.||.|.....|.|:|....:.|..|...:    ::..|:.|   |..|  |.|.:.
  Rat   300 QLHLNQLIRTSGVVTSCTGVLPQLSMVKYNCSKCNFILGPFCQSQNQEVK---PGSC--PECQST 359

  Fly   183 KRFMLDVEKSLFLDFQKIRIQETQAELPRGCIPRAVEIILRSELVETVQAGDRYDFTGTLIVVPD 247
            ..|.:::|::::.::|:|||||:..::..|.:||:.:.||.::||::.:.||..:.||..     
  Rat   360 GPFEINMEETIYQNYQRIRIQESPGKVAAGRLPRSKDAILLADLVDSCKPGDEIELTGIY----- 419

  Fly   248 VSVLAGVGTRAENSSRHKPGEGMDGVTGLKALGMRELNYRMAF--LACSVQATTARFGGTDLPMS 310
                            |...:|             .||....|  .|..:.|.........:.:.
  Rat   420 ----------------HNNYDG-------------SLNTTNGFPVFATIILANHVAKKDNKVAVG 455

  Fly   311 EVTAEDMKKQMTDAEWHKIYEMSKDRNLYQNLISSLFPSIYGNDEVKRGILLQQFGGVAKTTTEK 375
            |:|.||:|         .|..:|||:.:.:.:.:|:.|||||::::|||:.|..|||..|....|
  Rat   456 ELTDEDVK---------MITSLSKDQQIGEKIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGK 511

  Fly   376 TSLRGDINVCIVGDPSTAKSQFLKQVSDFSPRAIYTSGKASSAAGLTAAVVRDEESFDFVIEAGA 440
            ..:||||||.:.|||.||||||||.:...|.|||:|:|:.:||.||||.|.|...|.::.:||||
  Rat   512 HKVRGDINVLLCGDPGTAKSQFLKYIEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGA 576

  Fly   441 LMLADNGICCIDEFDKMDQRDQVAIHEAMEQQTISIARAGVRATLNARTSILAAANPINGRYDRS 505
            |:|||.|:|.|||||||:.:|:.:||||||||:|||::||:..:|.||.:::||||||.||||.|
  Rat   577 LVLADRGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPS 641

  Fly   506 KSLQQNIQLSAPIMSRFDLFFILVDECNEVVDYAIARKIVDLH-----SN-----------IEES 554
            .:..:|:.|:.||:||||:..::.|..:.|.|..:||.:|..|     ||           .|.:
  Rat   642 LTFSENVDLTEPIISRFDVLCVVRDTVDPVQDEMLARFVVGSHVRHHPSNKKDEGLTNGGTTEPA 706

  Fly   555 VERAYTRE----EVL-RYVTFARQ-FKPVISQEAGHMLVENYGHLRQRDTGTSGRSTWRITVRQL 613
            :...|..|    ||| :|:.:|:: .:|.::|.....:...|..||:....|   .:..||||.:
  Rat   707 MPNTYGVEPLPQEVLKKYIIYAKERVRPKLNQMDQDKVARMYSDLRKESMAT---GSIPITVRHI 768

  Fly   614 ESMIRLSEAMAKLECSNRVLERHVKEAFRLLNKSIIRVEQ 653
            |||||::||.|::...:.|:|..|..|.|::.:|.|..::
  Rat   769 ESMIRMAEAHARMHLRDYVMEDDVNMAIRVMLESFIDTQK 808

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm6NP_511065.1 MCM_N 25..109 CDD:379644 17/99 (17%)
MCM 113..649 CDD:214631 195/563 (35%)
MCM6_C 702..816 CDD:375690
Mcm2NP_001101343.2 MCM2_N 73..183 CDD:289392 217/690 (31%)
MCM_N 199..311 CDD:291233 23/124 (19%)
MCM 292..804 CDD:214631 195/562 (35%)
P-loop_NTPase 486..>633 CDD:304359 81/146 (55%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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