DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mcm6 and mcm-3

DIOPT Version :9

Sequence 1:NP_511065.1 Gene:Mcm6 / 31603 FlyBaseID:FBgn0025815 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_506706.1 Gene:mcm-3 / 180010 WormBaseID:WBGene00003155 Length:812 Species:Caenorhabditis elegans


Alignment Length:709 Identity:217/709 - (30%)
Similarity:341/709 - (48%) Gaps:116/709 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 RH-KVRDLTTSKIGTLIRISGQVVRTHPVHPELVSGVFMCLDCQTEIRNVEQQFKFTNPTICRNP 177
            || ..|.|.:|.:|.|:...|.|.:...|..:|::.|..|     ...|...:.||.:.|:....
 Worm   114 RHVNPRTLKSSYLGNLVCCEGIVTKCSTVRQKLLTSVHYC-----PATNKVLEKKFADFTMLDTA 173

  Fly   178 VCSN------RKRFMLDVE--KSLFLDFQKIRIQETQAELPRGCIPRAVEIILRSELVETVQAGD 234
            |.:|      ..:..|:.|  .|::.|.|...|||.....|.|.:||||:.:...:|.:.|:.||
 Worm   174 VTNNNYPTEDENKNPLETEFGHSVYKDHQTFTIQELPESAPAGQLPRAVDCVADLDLADRVKPGD 238

  Fly   235 RYDFTGTLIVVPDVSVLAGVGTRAENSSRHKPGEGMDGVTGLKALGMRELNYRMAFLACSVQATT 299
            |....|...|:|:                             |..|:...::|...:...:|..:
 Worm   239 RVRIIGVFRVLPN-----------------------------KQNGVSSGSFRSIIIINHIQMLS 274

  Fly   300 ARFGGTDLPMSEVTAEDMKKQMTDAEWHKIYEMSKDRNLYQNLISSLFPSIYGNDEVKRGILLQQ 364
            ...    :|..|  .:|:|         .:.::||.||.::.|..||.|||.|::|.|:.:|...
 Worm   275 KEV----IPNFE--PQDVK---------DVRKISKSRNPFELLARSLAPSICGHEETKKALLCLL 324

  Fly   365 FGGVAKTTTEKTSLRGDINVCIVGDPSTAKSQFLKQVSDFSPRAIYTSGKASSAAGLTAAVVRDE 429
            .||:.|.....:.|||||||.::||||.||||.|:.|...:||||.|:|:.||..||||||..|.
 Worm   325 LGGMEKILNNGSRLRGDINVLLIGDPSVAKSQLLRYVLRMAPRAITTTGRGSSGVGLTAAVTTDP 389

  Fly   430 ESFDFVIEAGALMLADNGICCIDEFDKMDQRDQVAIHEAMEQQTISIARAGVRATLNARTSILAA 494
            :|.:..:||||::|||.|:.||||||||...|:.||||.|||..::|::||:.|.||||.|:|||
 Worm   390 DSGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHAKLNARCSVLAA 454

  Fly   495 ANPINGRYDRSKSLQQNIQLSAPIMSRFDLFFILVDECNEVVDYAIARKIVDLH----------- 548
            |||:.|||:..||..:||.:...::|||||.|:|:||.:...|..:|..::.||           
 Worm   455 ANPVYGRYNPFKSPMENIGMQDSLLSRFDLIFVLLDEHDADKDANVAEHVLKLHTYRTQGEADGT 519

  Fly   549 -----------------------SNIEESVE-------RAYTREEVLRYVTFARQFKPVISQEAG 583
                                   |..||:.:       :..|.:.:.:|:..||..:|.::.||.
 Worm   520 VLPMGGGVETISTINMETKKASSSIYEENTQWAGIQDTKILTMDFMRKYIHLARSVQPKLTDEAT 584

  Fly   584 HMLVENYGHLRQRD-TGTSGRSTWRITVRQLESMIRLSEAMAKLECSNRVLERHVKEAFRLLNKS 647
            ..:.|.|..:|..| |.|....|..:|.||||::||||.|:||...|.:|.....::|:.||:.:
 Worm   585 EYISEVYADIRSFDITKTDQERTMPVTARQLETLIRLSTAIAKARFSKKVEREDTEKAYNLLHFA 649

  Fly   648 IIRVEQPDIHLDDDE-----GLDMDDGIQHDIDMENNGAAANVDE--NNGMDTSAS--GAVQKKK 703
            ..: |:|....:.::     .:|.||    |.|..:|...|..:|  ::.:.|:|:  ..|:::.
 Worm   650 CFK-EKPKARQEYEKKKRAPRIDGDD----DEDQSDNEDMATSEEPQSSSVPTAATPRRGVRRRA 709

  Fly   704 FTLSFEDYKNLSTMLVLHMRAEEARCEVEGNDTGIKRSNVVTWYLEQVADQIESEDELI 762
            .....:|....:|:......|::||.....  .|:.|...:..|:.:..|.|.|.|:::
 Worm   710 EDDDSQDSMMDTTIGESQPTAKKARTGPAA--IGVDRYKELRKYVRKAFDDIGSTDDMV 766

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm6NP_511065.1 MCM_N 25..109 CDD:379644
MCM 113..649 CDD:214631 192/585 (33%)
MCM6_C 702..816 CDD:375690 12/61 (20%)
mcm-3NP_506706.1 MCM_N 25..109 CDD:379644
MCM 114..649 CDD:214631 192/583 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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