DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pigs and CLMN

DIOPT Version :9

Sequence 1:NP_001245550.1 Gene:pigs / 31596 FlyBaseID:FBgn0029881 Length:977 Species:Drosophila melanogaster
Sequence 2:XP_011535460.1 Gene:CLMN / 79789 HGNCID:19972 Length:1033 Species:Homo sapiens


Alignment Length:953 Identity:179/953 - (18%)
Similarity:287/953 - (30%) Gaps:353/953 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 KNEKHVILCLLE-VARRGAKFGM---------------------LAPMLVQMERQIDREIAADIK 184
            |:::..|..||. |.|:..|:|:                     :.|.||.|::.:         
Human   184 KDQRKAIKALLAWVQRKTRKYGVAVQDFAGSWRSGLAFLAVIKAIDPSLVDMKQAL--------- 239

  Fly   185 ANGAGCSENGTQTDALETGNSSAATMTTITTTTVETDLYDDSDDSETEDDGDQNPVLMYGPQ--- 246
                   ||.|: :.||...|.|.....|.......|:..|:.|.::        ::.|..|   
Human   240 -------ENSTR-ENLEKAFSIAQDALHIPRLLEPEDIMVDTPDEQS--------IMTYVAQFLE 288

  Fly   247 --PQIITNDLKSLDEMVRDLVEKCTCPSQFPMVRVSEGKYRIGDTKVLIFVRILRSHVMVRVGGG 309
              |::...|:...|:.|         |.:...||:.|.... .::||.         |:...|..
Human   289 RFPELEAEDIFDSDKEV---------PIESTFVRIKETPSE-QESKVF---------VLTENGER 334

  Fly   310 WDTLSHYLDKHDPCRCRAQHRSSVAARLIPRQSPNHNPSNGIELHKAQVIFERSPPAARRVFNSP 374
            ..|::|. ..|.|                        ||.         :|....|.:.:.|...
Human   335 TYTVNHE-TSHPP------------------------PSK---------VFVCDKPESMKEFRLD 365

  Fly   375 NCNGGPGTGSSCGTGVVGVAVPPTLQNGHSLSPNSGKYRSRS-PTPQRKFLNQQANGGGIASATG 438
            ..:....:.||  |..:...:...||.|      .||....| |:|:...|:.:...|. :::..
Human   366 GVSSHALSDSS--TEFMHQIIDQVLQGG------PGKTSDISEPSPESSILSSRKENGR-SNSLP 421

  Fly   439 SSQTV--TTDTSSGQLL---------GSPSLARRSMSPSPRRLI-----DMRKKQSSLDSYSSGP 487
            ..:||  ..||......         |||.:|:.|:......|.     :..:||.|.....|..
Human   422 IKKTVHFEADTYKDPFCSKNLSLCFEGSPRVAKESLRQDGHVLAVEVAEEKEQKQESSKIPESSS 486

  Fly   488 KSLPGYSCSMEEANGGSGVGSAAGGVSS-----------GSAGSGV----------------AGE 525
            ..:.|....:|..|..|...|..|.:.|           ...|...                |.|
Human   487 DKVAGDIFLVEGTNNNSQSSSCNGALESTARHDEESHSLSPPGENTVMADSFQIKVNLMTVEALE 551

  Fly   526 QGG--------ANKF---------------------ENISDNGSEISDEGYRSLG--VIQSGAQK 559
            :|.        |:||                     |...|..:|..:.....||  .|:|..:|
Human   552 EGDYFEAIPLKASKFNSDLIDFASTSQAFNKVPSPHETKPDEDAEAFENHAEKLGKRSIKSAHKK 616

  Fly   560 RESLHSQASIEDAESNARLDQTSSDSQISPSDEPAE-----------KATTDILEEE----DLNG 609
            ::|...|..::..|.:....:.:.....:|.:.|.:           |:|....|||    ||.|
Human   617 KDSPEPQVKMDKHEPHQDSGEEAEGCPSAPEETPVDKKPEVHEKAKRKSTRPHYEEEGEDDDLQG 681

  Fly   610 QDREEDQEDYSVCDGPQSLPAILSGAHKLSDKFEQSGVFITDDEITVDIAKTEDQSVANTMGNPT 674
            ...|......|.|...::|     |:|               .|..:|.             .|:
Human   682 VGEELSSSPPSSCVSLETL-----GSH---------------SEEGLDF-------------KPS 713

  Fly   675 PNLSK---IPRS---------PLA-----------QRRRRSIDNSTCGGAGGSLQDLSSR----- 711
            |.|||   ||..         |||           ..:...:|...   ..|.:.||.||     
Human   714 PPLSKVSVIPHDLFYFPHYEVPLAAVLEAYVEDPEDLKNEEMDLEE---PEGYMPDLDSREEEAD 775

  Fly   712 -------SGLPAPAF--SRKQPVYRSVRTRNSTGAT----TTPVAPPR--------------SRQ 749
                   |.:|..:.  :..|.:|.|   |...|.|    ..|:||..              |.|
Human   776 GSQSSSSSSVPGESLPSASDQVLYLS---RGGVGTTPASEPAPLAPHEDHQQRETKENDPMDSHQ 837

  Fly   750 ATQLPMVRDVTNTWSGRTT----GAPKRRPPCTAD-----TFVAPTNGTGPAGSFERNGKGRSSQ 805
            :.:.|.:.::.|......|    .:.|:......|     .||||       ||.:     .|..
Human   838 SQESPNLENIANPLEENVTKESISSKKKEKRKHVDHVESSLFVAP-------GSVQ-----SSDD 890

  Fly   806 ILYDSNGRRVRSGAPGCTSSLTTSPVKNHASSPLAQQLLEAASS---------AKNDAQILEKMK 861
            :..||:...:    |..||         |:.|.:..:.....||         .:|.|.:.::..
Human   891 LEEDSSDYSI----PSRTS---------HSDSSIYLRRHTHRSSESDHFSYVQLRNAADLDDRRN 942

  Fly   862 SLLSRYAAGNQTKA-----GVGAT-------ATAANKINSNGK 892
            .:|:||:....|:.     |:.|.       |..:.|.||:|:
Human   943 RILTRYSTQKLTELILQFYGIRADMKRESKHARMSMKANSSGE 985

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pigsNP_001245550.1 CH 22..159 CDD:237981 6/17 (35%)
GAS2 258..325 CDD:280367 14/66 (21%)
CLMNXP_011535460.1 CH 33..134 CDD:278723
CH 191..286 CDD:278723 22/119 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0516
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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