DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pigs and Gas2l1

DIOPT Version :9

Sequence 1:NP_001245550.1 Gene:pigs / 31596 FlyBaseID:FBgn0029881 Length:977 Species:Drosophila melanogaster
Sequence 2:NP_001177337.1 Gene:Gas2l1 / 78926 MGIID:1926176 Length:678 Species:Mus musculus


Alignment Length:821 Identity:253/821 - (30%)
Similarity:354/821 - (43%) Gaps:210/821 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ARPYRPFKSSEEYLEAMREDLAEWLSTLYP-ELSINADNFMDRLDTGVALCKHANYVRQAAVDYL 69
            |:..|||:|||.|:|||:||||:||:.||. .|..:.|.|:..|.||..||:|||.|.:||....
Mouse    13 AKSVRPFRSSEAYVEAMKEDLADWLNALYSLGLPGSGDGFLTGLATGTTLCQHANAVTEAARALA 77

  Fly    70 ARRQARNKSMTRSMTSGLAGPILAMGNVHYLPAAKSGTFFARDNVSNFITWCRKSLKIIECLLFE 134
            |.|..|                   |......:...|:|.|||||::||.|||..|.:.|.|:||
Mouse    78 AARPTR-------------------GVAFQAHSVAPGSFMARDNVASFIGWCRAELGVPEVLMFE 123

  Fly   135 TDDLIMRKNEKHVILCLLEVARRGAKFGMLAPMLVQMERQIDREIAADIKANGAGCSENGTQTDA 199
            |:||::|||||.|:|||||||||||:.|:|||.|||.|::|:||:.|..:.:....:|.    |.
Mouse   124 TEDLVLRKNEKSVVLCLLEVARRGARLGLLAPRLVQFEQEIERELRATPQVSSVPAAEE----DV 184

  Fly   200 LETGNSSAATMTTITTTTVETDLYDDSDDSETEDDGDQNPVLMYGPQPQIITNDLKSLDEMVRDL 264
            .|     .||:..:.|.|                             |::..|||::|||:||::
Mouse   185 TE-----IATVPGVPTRT-----------------------------PRMTPNDLRNLDELVREI 215

  Fly   265 VEKCTCPSQFPMVRVSEGKYRIGDTKVLIFVRILRSHVMVRVGGGWDTLSHYLDKHDPCRCRAQH 329
            :.:||||.||||::|||||||:||:.:|||||:||||||||||||||||.|||||||||||    
Mouse   216 LGRCTCPDQFPMIKVSEGKYRVGDSSLLIFVRVLRSHVMVRVGGGWDTLEHYLDKHDPCRC---- 276

  Fly   330 RSSVAARLIPRQSPNHNPSNGIELHKAQVIFERSPPAARRVFNSPNCNGGPGTGSSCGTGVVGVA 394
             ||...||..:::...:|..|            ||..:.|       .|.|..||...:.  ...
Mouse   277 -SSSTHRLPQQRTGTFSPQRG------------SPTPSPR-------PGSPVPGSERRSS--RPE 319

  Fly   395 VPPTLQNGHSLSPNSGKYRSRS---PTPQRKFLNQQANGGGIASATGSSQTVTTDTSSGQLLGSP 456
            |.|....|....|.: ..|.|.   |.|:.:..:..::....::.:|.....:.|:::|.....|
Mouse   320 VTPISLRGTKEGPET-PLRPRDQLPPLPRSRRYSGDSDSSASSAQSGPMGARSDDSATGSRRERP 383

  Fly   457 SLARRSMSP-SPRRLIDMRKKQSSLDSYSSG-PKSLPG---------------YSCSMEEA---- 500
            |....|..| ||||  ....:..|.|....| |:..||               .|.|.||.    
Mouse   384 SHRPTSCLPASPRR--PTAPRSQSRDRLDRGRPRVAPGGRGAQLSTSSPARRTRSQSREEQAVLM 446

  Fly   501 ----NGGSGVGSAAGGVSSGSAGSGVAGEQ-------------GGANKFENISDNGSEISDEGYR 548
                ..|.....|.|....||.|||.:..|             .|.:....::...:.|    :|
Mouse   447 VRRDRDGQHSWVARGRGGGGSGGSGRSTPQTPRALSPAAPRPSRGPSPGPELAATPASI----FR 507

  Fly   549 SLGVIQSGAQKRESLHSQASIEDAESNAR-LDQTSSDSQI-SPSDEPAEKATTDILEEEDLNGQD 611
            :  .:|...|:.:.|..:.. |:..:||| |:..:|.:.: |..|.||                 
Mouse   508 T--PLQLDPQQEQQLFRRLE-EEFLANARALEAAASHTPMGSAPDPPA----------------- 552

  Fly   612 REEDQEDYSVCDGPQSLPAILSGAHKLSDKFEQSGVFITDDEITVDIAKTEDQSVANTMGNPTPN 676
                 .|.:.|....|    .|....|..|..|.|               |....||  |.|.| 
Mouse   553 -----PDSAYCSSSSS----SSSLSVLGGKCGQPG---------------ESGRTAN--GLPGP- 590

  Fly   677 LSKIPRSPLAQRRRRSIDNSTCGGA-----GGSLQDLSSRSGLPAPAFSRKQPVYRSVRTRNSTG 736
                        |.:::.:|:..|:     ||:|.  ::||.|..|     :|.....|.|..|.
Mouse   591 ------------RSQALSSSSDEGSPYLAVGGALD--ATRSSLAGP-----EPSLTWARGRMDTQ 636

  Fly   737 ATTTP--VAPPRSRQATQLPMVRDVTNTWSGRTTGAPKRRP 775
            ....|  :..||..:....|:   ....|..:.:..|:..|
Mouse   637 PDRKPSRIPTPRGPRRPSGPI---ELGAWHAQHSVTPRTEP 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pigsNP_001245550.1 CH 22..159 CDD:237981 62/137 (45%)
GAS2 258..325 CDD:280367 51/66 (77%)
Gas2l1NP_001177337.1 CH 29..148 CDD:237981 62/137 (45%)
GAS2 206..278 CDD:128539 54/76 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 276..524 58/282 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 538..678 40/203 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167830684
Domainoid 1 1.000 131 1.000 Domainoid score I5152
eggNOG 1 0.900 - - E2759_KOG0516
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1343422at2759
OrthoFinder 1 1.000 - - FOG0001647
OrthoInspector 1 1.000 - - otm44096
orthoMCL 1 0.900 - - OOG6_107791
Panther 1 1.100 - - O PTHR46756
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5836
SonicParanoid 1 1.000 - - X3764
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.740

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