DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pigs and pleca

DIOPT Version :9

Sequence 1:NP_001245550.1 Gene:pigs / 31596 FlyBaseID:FBgn0029881 Length:977 Species:Drosophila melanogaster
Sequence 2:XP_021323775.1 Gene:pleca / 567639 ZFINID:ZDB-GENE-030131-8984 Length:4790 Species:Danio rerio


Alignment Length:773 Identity:158/773 - (20%)
Similarity:262/773 - (33%) Gaps:287/773 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 FKSSEEYL---EAMREDLAEWLSTLYPELSINADNFMDRLDTGVALCKHANYVRQAAVDYLARRQ 73
            |:.::|.|   :||::.|   |::                |||::|.:     .|||..|:. ..
Zfish  3578 FQKTKEKLSIYQAMKQKL---LTS----------------DTGMSLLE-----AQAATGYII-DP 3617

  Fly    74 ARNKSMT--RSMTSGLAGPILAMGNVH--YLPAAKSGTFFARDNVSNFITWCRKSLKIIECLLFE 134
            .||:..|  .::.:|:.||     .||  .|.|.|:.|.:......|.|:..:...|        
Zfish  3618 IRNEMFTVDDAVKAGIVGP-----EVHEKLLSAEKAVTGYKDPYTGNKISLLQAMQK-------- 3669

  Fly   135 TDDLIMRKNEKHVILCLLEVARRGAKFGMLAPML-------VQMER-QIDREIAA-------DIK 184
              .|::|   :|.|..|......|   |::.|:.       |.:|| ...:::|.       |||
Zfish  3670 --QLVLR---EHAIPLLDAQVATG---GIIDPVNSHRLPNDVAIERGYFSKQLAKSFKDPTDDIK 3726

  Fly   185 A-NGAGCSENGT--------QTDALETG-----NSSAATMTTITTTTVETDLYDDSDDSETEDD- 234
            . ......||.|        .||. |.|     .|.|.|......:.|.|:....:|.:.|:.| 
Zfish  3727 GFTDPNKDENVTYKQLKERCMTDP-EFGVALLPLSKAQTHEEAEKSYVYTEEQAQTDLANTQIDI 3790

  Fly   235 ------GDQNPVLMYGPQPQIITNDLKSLDEMVRDLVEKCTCPSQFPMVRVSEGKYRIG----DT 289
                  |.|  |.::    :::.:|:...:|..| |:|                :||.|    :.
Zfish  3791 PHERFAGKQ--VTLW----EVMKSDMLPEEEKQR-LLE----------------QYRSGKITKER 3832

  Fly   290 KVLIFVRILRSHVMVRVGGGWDTLSHYLDKHDPCRCRAQHRSSVAARLIPRQSPNHNPSNGIELH 354
            .|:|.:.|:....:::.                       ..|::..:|.|:....      ||:
Zfish  3833 MVIIIIEIIEQREIIKT-----------------------EQSMSCDVIRRRVTID------ELY 3868

  Fly   355 KAQVI-------FERSPPAARRVFNSPNCNGGP-GTGSSCGT---GVVGVAVPPTLQNGHSLSPN 408
            :|::|       .::...|.|.|...|:..... ||||..|.   ....|::...::.| .:.|:
Zfish  3869 RARIIDLETYNLLKQGKKAIREVMEMPSVKQYLFGTGSISGVLSDNYAKVSIYQAMKRG-LIKPD 3932

  Fly   409 SGKYRSRSPTPQRKFLNQQANGGGIASATG------SSQTVTTDTSSGQLLGSPSLARRSMSPSP 467
            .|          ...|..||       |||      ..:.:|.|.:..:.|..|....:.:|.. 
Zfish  3933 IG----------IDLLEAQA-------ATGFMIDPVKDELLTVDEAVRKGLVGPEFHDKLLSAE- 3979

  Fly   468 RRLIDMRKKQSSLDSYSSGPKSL----------PGYSCSMEEANGGSGVGSAAGGVSSGS----A 518
                  |......|.||....||          ..|:..:.||.      .|.||:....    .
Zfish  3980 ------RAVTGYKDPYSGKVISLFQAMKKDLVPEDYAMKLLEAQ------VATGGLMDPEYYFRL 4032

  Fly   519 GSGVAGEQGGANK--FENISDNGSEI-------SDE--GYRSLGVIQSGAQKRESLHSQASIEDA 572
            ...:|.::|..||  .|.|||...::       :||  .|.||       .||..:       |.
Zfish  4033 PIDIAMQRGYMNKETSERISDPSGDVNQFIDPTTDEKVSYASL-------LKRCKV-------DK 4083

  Fly   573 ESNARLDQTSSDSQISPSDE------------PAEKATTDILEEEDLNG--------QDREEDQE 617
            ||..||        :|.:|:            |.|...:.|::::...|        :|..:|.:
Zfish  4084 ESGLRL--------LSLADKRLLFKGLRKQITPEELLRSQIIDQKTYTGLMEGTISVEDLSKDLK 4140

  Fly   618 DYSVCDGPQSLPAILSGAHKLSDKFEQSGVFI--TDDEITVDIAKTEDQSVANTMGNP 673
            .|            |.|...:      :|||:  |.|.::|      .|::..||..|
Zfish  4141 KY------------LEGISSI------AGVFVEATKDRLSV------YQAMKKTMIRP 4174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pigsNP_001245550.1 CH 22..159 CDD:237981 31/140 (22%)
GAS2 258..325 CDD:280367 10/70 (14%)
plecaXP_021323775.1 SAC6 223..>462 CDD:227401
SPEC 736..830 CDD:197544
SPEC 831..1021 CDD:238103
SH3 1023..1068 CDD:327375
SMC_N <1251..1797 CDD:330553
Neuromodulin_N <1563..2182 CDD:331332
Neuromodulin_N <1991..2836 CDD:331332
Plectin 2950..2989 CDD:307019
PLEC 2986..3023 CDD:197605
Plectin 3025..3065 CDD:307019
Plectin 3240..3278 CDD:332473
Plectin 3277..3316 CDD:307019
PLEC 3314..3350 CDD:197605
Plectin 3352..3392 CDD:307019
Plectin 3566..3605 CDD:307019 10/45 (22%)
Plectin 3604..3643 CDD:307019 13/49 (27%)
PLEC 3641..3677 CDD:197605 9/48 (19%)
Plectin 3679..3716 CDD:307019 7/39 (18%)
Plectin 3937..3976 CDD:307019 10/45 (22%)
Plectin 4012..4052 CDD:307019 10/45 (22%)
Plectin 4141..4181 CDD:307019 13/58 (22%)
Plectin 4180..4219 CDD:307019
PLEC 4217..4248 CDD:197605
Plectin 4255..4294 CDD:307019
Plectin <4357..4385 CDD:307019
PLEC 4490..4523 CDD:197605
Plectin 4525..4564 CDD:307019
Plectin 4601..4640 CDD:307019
PLEC 4638..4675 CDD:197605
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0516
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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