DRSC/TRiP Functional Genomics Resources

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Protein Alignment pigs and pleca

DIOPT Version :10

Sequence 1:NP_572331.2 Gene:pigs / 31596 FlyBaseID:FBgn0029881 Length:977 Species:Drosophila melanogaster
Sequence 2:XP_021323777.1 Gene:pleca / 567639 ZFINID:ZDB-GENE-030131-8984 Length:4778 Species:Danio rerio


Alignment Length:773 Identity:158/773 - (20%)
Similarity:262/773 - (33%) Gaps:287/773 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 FKSSEEYL---EAMREDLAEWLSTLYPELSINADNFMDRLDTGVALCKHANYVRQAAVDYLARRQ 73
            |:.::|.|   :||::.|   |::                |||::|.:     .|||..|:. ..
Zfish  3566 FQKTKEKLSIYQAMKQKL---LTS----------------DTGMSLLE-----AQAATGYII-DP 3605

  Fly    74 ARNKSMT--RSMTSGLAGPILAMGNVH--YLPAAKSGTFFARDNVSNFITWCRKSLKIIECLLFE 134
            .||:..|  .::.:|:.||     .||  .|.|.|:.|.:......|.|:..:...|        
Zfish  3606 IRNEMFTVDDAVKAGIVGP-----EVHEKLLSAEKAVTGYKDPYTGNKISLLQAMQK-------- 3657

  Fly   135 TDDLIMRKNEKHVILCLLEVARRGAKFGMLAPML-------VQMER-QIDREIAA-------DIK 184
              .|::|   :|.|..|......|   |::.|:.       |.:|| ...:::|.       |||
Zfish  3658 --QLVLR---EHAIPLLDAQVATG---GIIDPVNSHRLPNDVAIERGYFSKQLAKSFKDPTDDIK 3714

  Fly   185 A-NGAGCSENGT--------QTDALETG-----NSSAATMTTITTTTVETDLYDDSDDSETEDD- 234
            . ......||.|        .||. |.|     .|.|.|......:.|.|:....:|.:.|:.| 
Zfish  3715 GFTDPNKDENVTYKQLKERCMTDP-EFGVALLPLSKAQTHEEAEKSYVYTEEQAQTDLANTQIDI 3778

  Fly   235 ------GDQNPVLMYGPQPQIITNDLKSLDEMVRDLVEKCTCPSQFPMVRVSEGKYRIG----DT 289
                  |.|  |.::    :::.:|:...:|..| |:|                :||.|    :.
Zfish  3779 PHERFAGKQ--VTLW----EVMKSDMLPEEEKQR-LLE----------------QYRSGKITKER 3820

  Fly   290 KVLIFVRILRSHVMVRVGGGWDTLSHYLDKHDPCRCRAQHRSSVAARLIPRQSPNHNPSNGIELH 354
            .|:|.:.|:....:::.                       ..|::..:|.|:....      ||:
Zfish  3821 MVIIIIEIIEQREIIKT-----------------------EQSMSCDVIRRRVTID------ELY 3856

  Fly   355 KAQVI-------FERSPPAARRVFNSPNCNGGP-GTGSSCGT---GVVGVAVPPTLQNGHSLSPN 408
            :|::|       .::...|.|.|...|:..... ||||..|.   ....|::...::.| .:.|:
Zfish  3857 RARIIDLETYNLLKQGKKAIREVMEMPSVKQYLFGTGSISGVLSDNYAKVSIYQAMKRG-LIKPD 3920

  Fly   409 SGKYRSRSPTPQRKFLNQQANGGGIASATG------SSQTVTTDTSSGQLLGSPSLARRSMSPSP 467
            .|          ...|..||       |||      ..:.:|.|.:..:.|..|....:.:|.. 
Zfish  3921 IG----------IDLLEAQA-------ATGFMIDPVKDELLTVDEAVRKGLVGPEFHDKLLSAE- 3967

  Fly   468 RRLIDMRKKQSSLDSYSSGPKSL----------PGYSCSMEEANGGSGVGSAAGGVSSGS----A 518
                  |......|.||....||          ..|:..:.||.      .|.||:....    .
Zfish  3968 ------RAVTGYKDPYSGKVISLFQAMKKDLVPEDYAMKLLEAQ------VATGGLMDPEYYFRL 4020

  Fly   519 GSGVAGEQGGANK--FENISDNGSEI-------SDE--GYRSLGVIQSGAQKRESLHSQASIEDA 572
            ...:|.::|..||  .|.|||...::       :||  .|.||       .||..:       |.
Zfish  4021 PIDIAMQRGYMNKETSERISDPSGDVNQFIDPTTDEKVSYASL-------LKRCKV-------DK 4071

  Fly   573 ESNARLDQTSSDSQISPSDE------------PAEKATTDILEEEDLNG--------QDREEDQE 617
            ||..||        :|.:|:            |.|...:.|::::...|        :|..:|.:
Zfish  4072 ESGLRL--------LSLADKRLLFKGLRKQITPEELLRSQIIDQKTYTGLMEGTISVEDLSKDLK 4128

  Fly   618 DYSVCDGPQSLPAILSGAHKLSDKFEQSGVFI--TDDEITVDIAKTEDQSVANTMGNP 673
            .|            |.|...:      :|||:  |.|.::|      .|::..||..|
Zfish  4129 KY------------LEGISSI------AGVFVEATKDRLSV------YQAMKKTMIRP 4162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pigsNP_572331.2 CH_GAS2L1_2 11..163 CDD:409117 36/157 (23%)
GAS2 257..325 CDD:460480 10/71 (14%)
plecaXP_021323777.1 CH_PLEC-like_rpt1 227..336 CDD:409037
CH_PLEC_rpt2 349..454 CDD:409087
SPEC 724..818 CDD:197544
SPEC 819..1009 CDD:238103
SH3_10 995..1061 CDD:407754
Spectrin_like 1096..1173 CDD:465730
CCDC158 <1240..>1774 CDD:464943
Smc <1527..>2103 CDD:440809
PTZ00121 <1979..2824 CDD:173412
Plectin 2938..2976 CDD:459901
PLEC 2974..3011 CDD:197605
Plectin 3014..3052 CDD:459901
Plectin 3265..3303 CDD:459901
PLEC 3302..3338 CDD:197605
Plectin 3341..3379 CDD:459901
Plectin 3554..3592 CDD:459901 10/44 (23%)
Plectin 3592..3630 CDD:459901 13/48 (27%)
PLEC 3629..3665 CDD:197605 9/48 (19%)
Plectin 3668..3704 CDD:459901 7/38 (18%)
Plectin 3925..3963 CDD:459901 10/44 (23%)
Plectin 4001..4039 CDD:459901 10/43 (23%)
Plectin 4130..4168 CDD:459901 13/57 (23%)
Plectin 4168..4206 CDD:459901
PLEC 4205..4236 CDD:197605
Plectin 4244..4282 CDD:459901
Plectin <4345..4373 CDD:459901
PLEC 4478..4511 CDD:197605
Plectin 4514..4552 CDD:459901
Plectin 4590..4628 CDD:459901
Blue background indicates that the domain is not in the aligned region.

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