DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pigs and macf1b

DIOPT Version :9

Sequence 1:NP_001245550.1 Gene:pigs / 31596 FlyBaseID:FBgn0029881 Length:977 Species:Drosophila melanogaster
Sequence 2:XP_695869.5 Gene:macf1b / 567481 ZFINID:ZDB-GENE-100922-36 Length:2086 Species:Danio rerio


Alignment Length:306 Identity:80/306 - (26%)
Similarity:122/306 - (39%) Gaps:68/306 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 LAPMLVQMERQIDREIAADIKANGAGCSENGTQTDALETGNSSAATM--TTITTTTVETDLYDDS 226
            |...::.:.|.|||:             ::|..|.. |..:|..|:.  |.:...|...:::|.:
Zfish  1838 LKSRILDVFRSIDRD-------------QDGRITHK-EFIDSVLASKFPTNVLEMTAVANIFDVN 1888

  Fly   227 DDSETEDDGDQNPVLMYGPQPQIITNDLKSLDEMVRDLVEKCTCPSQFPMVRVSEGKYRIGDTKV 291
            .|... |..:....|.....|...|.|:..::|.|...|.:|.||.:|.:.::|..:||.||::.
Zfish  1889 GDGFI-DYYEFVSALHPSRDPYRRTVDIDQINEEVSRQVSQCNCPKRFQVEQISANRYRFGDSQQ 1952

  Fly   292 LIFVRILRSHVMVRVGGGWDTLSHYLDKHDPCRCRAQHRSSVAARLIPRQSPNHNPSNGIELHKA 356
            |..||||||.:||||||||..|..:|.|:||||.:.:....:..:.:.|.:              
Zfish  1953 LRMVRILRSTLMVRVGGGWTALDEFLVKNDPCRVKGRTNLKIKEKYLSRDA-------------- 2003

  Fly   357 QVIFERSPPAARRVFNSPNCNGGPGTGSSCGTGVVGVAVPPTLQNGHSLSPNSGKYRSRSPTPQR 421
               ||.|   .||             ||:.|..|        .::..|||..|......||..::
Zfish  2004 ---FETS---GRR-------------GSAKGLTV--------SRSNSSLSLYSSASAPSSPLTRK 2041

  Fly   422 KFLNQQANGGGIASATGSSQTVTTDTSSGQLLGSPSLARRSMSPSP 467
            ..|.:..:|          :......||...|||........||||
Zfish  2042 ALLRRSFSG----------ERCVRPRSSIAALGSDHFCADIDSPSP 2077

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pigsNP_001245550.1 CH 22..159 CDD:237981
GAS2 258..325 CDD:280367 33/66 (50%)
macf1bXP_695869.5 SPEC 219..435 CDD:238103
SPEC 586..805 CDD:295325
SPEC 810..1021 CDD:238103
SPEC 1024..1237 CDD:238103
SPEC 1139..1347 CDD:238103
SPEC 1350..1566 CDD:238103
SPEC 1463..1671 CDD:238103
EFh 1841..1903 CDD:238008 14/76 (18%)
EF-hand_7 1842..1902 CDD:290234 14/74 (19%)
GAS2 1919..1986 CDD:280367 33/66 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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