DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pigs and gas2l3

DIOPT Version :9

Sequence 1:NP_001245550.1 Gene:pigs / 31596 FlyBaseID:FBgn0029881 Length:977 Species:Drosophila melanogaster
Sequence 2:XP_005164513.2 Gene:gas2l3 / 566151 ZFINID:ZDB-GENE-030131-2560 Length:619 Species:Danio rerio


Alignment Length:561 Identity:143/561 - (25%)
Similarity:219/561 - (39%) Gaps:187/561 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 EEYLEAMREDLAEWLSTLYPELSINADNFMDRLDTGVALCKHANYVRQAAVDYLARRQARNKSMT 80
            |..|..|:||||.|||.:..| .::|:.||:.||.||.||:....:             ::|...
Zfish   119 EATLVPMQEDLAIWLSGMLGE-QLSAERFMEELDNGVRLCRLVGIL-------------QSKIPE 169

  Fly    81 RSMTSGLAGPILAMGNVHYLPAAKSGTFFARDNVSNFITWCRKSLKIIECLLFETDDLIMRKNEK 145
            .|.|.      :....:.:...|..|:||||||.:||::||| .:.:.|..|||::.|::.|..:
Zfish   170 DSETP------MPSKKIQFKKNASPGSFFARDNTANFLSWCR-HIGVDETYLFESEGLVLHKEPR 227

  Fly   146 HVILCLLEVARRGAKFGMLAPMLVQMERQIDREIAADIKANGAGCSENGTQTDALETGNSSAATM 210
            .|.|||||:.|..:::|:..|:||::|::|:.|             |:...||       .::.:
Zfish   228 QVCLCLLEIGRIVSRYGIEPPVLVKLEKEIELE-------------ESMMMTD-------HSSPV 272

  Fly   211 TTITTTTVETDLYDDSDDSETEDDGDQNPVLMYGPQPQIITNDLKSLDEMVRDLVEKCTCPSQFP 275
            .|.|.......:|.       .|..||                    ||      ..|.|..:|.
Zfish   273 KTFTVCCQHGAMYH-------ADRADQ--------------------DE------PPCNCTQKFS 304

  Fly   276 MVRVSEGKYRIGDTKVLIFVRILR-SHVMVRVGGGWDTLSHYLDKHDPCR--------------- 324
            :..:|||:||:||.  ::|:|:|. .|||||||||||||..:|.|:||.|               
Zfish   305 IEYLSEGRYRLGDK--ILFIRMLHGKHVMVRVGGGWDTLKGFLLKYDPDRVLQFTTLEQKILAYQ 367

  Fly   325 -----CRAQHRSS----------VAARLIPRQSPNHNPSNGIELHKAQV------------IFER 362
                 ..:.|.|.          .|..|:|..|.:.:.|:...::|...            :..|
Zfish   368 KGPSSSGSTHSSQTAQPPTMDPIAAVNLLPESSSSSSSSSTTSVYKPSTPRSVTQSPASTPLIAR 432

  Fly   363 SPPAARRVFNSPNCNGGPGTGSSCGTGVVGVAVPPTLQNGHSLSPNSGKYRSRSPTPQRKFLNQQ 427
            ...|.:::||:|..:                  |.|       :|.|.....|||.||       
Zfish   433 KAAAPKKIFNTPTSS------------------PKT-------TPLSSPVPKRSPLPQ------- 465

  Fly   428 ANGGGIASATGSSQTVTTDTSSGQLLGSPSLARRSMSPSP---------------------RRLI 471
                  ::.:|.||.....|.. :..||||..|..:.|.|                     .|:.
Zfish   466 ------STLSGVSQKAVPKTKL-RPRGSPSQPRSPVCPEPTCKQPKSSAPSAQKPPAGPVRTRIA 523

  Fly   472 DMRKKQSSLDSYS--SG------PKSLPGYSCSMEEANGGS 504
            ..|....:|||..  ||      |.:.|....|:|::...|
Zfish   524 QRRPPSPALDSKKPCSGSPRAPIPLTKPSQGKSVEQSTTAS 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pigsNP_001245550.1 CH 22..159 CDD:237981 47/136 (35%)
GAS2 258..325 CDD:280367 33/87 (38%)
gas2l3XP_005164513.2 CH 124..239 CDD:237981 46/135 (34%)
GAS2 297..353 CDD:280367 30/57 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1343422at2759
OrthoFinder 1 1.000 - - FOG0001647
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.920

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