DRSC/TRiP Functional Genomics Resources

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Protein Alignment pigs and clmnb

DIOPT Version :10

Sequence 1:NP_572331.2 Gene:pigs / 31596 FlyBaseID:FBgn0029881 Length:977 Species:Drosophila melanogaster
Sequence 2:NP_001003605.1 Gene:clmnb / 445211 ZFINID:ZDB-GENE-040801-124 Length:687 Species:Danio rerio


Alignment Length:606 Identity:115/606 - (18%)
Similarity:198/606 - (32%) Gaps:156/606 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   346 NPSNGIELHKAQVIFERSPPAARRVFNSPN--------C---NGGPGTGSSCGTGVVGVAVPPTL 399
            :||..:.|....:::.:.....|.:..||:        |   :.|..:.:|.|..:.|     ||
Zfish   119 SPSAVLRLIWNIIVYYQIKQVTRSLEKSPSTFSLLSLPCDSDSSGRSSPASPGDDIFG-----TL 178

  Fly   400 QNGHSLSPNSGKYRSRSPTPQRKFLNQQANGGGIASATGSSQTVTT-------DTSSGQLLGSPS 457
                   |:.||         :...|.:..|..|.:....:|..|.       |.......|...
Zfish   179 -------PSKGK---------KSLKNLKYRGTAIKTLLSWAQNCTAKYGVEIRDFGKSWRSGLAF 227

  Fly   458 LA------------RRSMSPSPRRLID--MRKKQSSLD-----------SYSSGPKSLPGYSCSM 497
            :|            |:::|..||..::  .|..|..|.           .:|...:|:..|....
Zfish   228 VALVKFFCPEFVHMRKALSSEPRLNMETAFRAAQEWLGIPPLLNPDDVAVHSPDEQSIITYIAQF 292

  Fly   498 EEANGGSGVGSAAGGVSSGSAGSGVAGEQGGANKFENISDNG------SEISDEGYRSLGVIQSG 556
            .|...|....:.:...|.|:..|        ..:::.:|.:.      |.:|.|..|.|..:...
Zfish   293 LECCPGHDEDAMSTDSSRGTPNS--------TERWDRVSTDSDSCVFPSNVSTEALRDLYNLSET 349

  Fly   557 AQKRESLHS---------QASIED----AESNARLDQTSSDSQISPSDEPA-EKATTDILEEEDL 607
            :::.::.|:         |.:|.|    :||...:.:||:..|.  .|..| .|.....||::..
Zfish   350 SEEEQTYHTGDQESLSVCQENIRDLAARSESLLNVKKTSTGGQC--CDSIAWRKRWIGSLEDDGN 412

  Fly   608 NGQDREEDQEDYSVCDGPQ--SLPAILSGAHKLSDKFEQSGVFITDDEITVDIA-KTEDQSVANT 669
            ..:..:|.....||.|..:  :...||...||      .||:     |..:|.. .|...|.|..
Zfish   413 CSEVSKEAVYSLSVLDSDEEDAFSYILELDHK------DSGL-----ESNIDFGLNTVMDSQAVE 466

  Fly   670 MGNPTPNLSKIPRSPL------AQRRRRSIDNSTCGGAGGSLQDLSSRSGLPAPAFSRKQPVYRS 728
            ......::.:...|.:      |||..::.|.|...|.|.....::         ..:.:|...:
Zfish   467 FDLNVASIFETQESEIKYCCCEAQRNLKATDVSVRSGGGKCTNKIT---------LDQVRPTKSN 522

  Fly   729 VRTRNSTGATTTPVAPPRSRQATQLPMVRDVTNTWSGRTTGAP------KRRPPCTADTFVAPTN 787
            :.|.|:....|.|.:.........   :..:.|.:...|...|      |.:...:||.| ..:|
Zfish   523 ILTENNCDEKTLPASDTLLMNQNS---IEKIENNFKLYTDERPDLNCSLKMKESDSADAF-THSN 583

  Fly   788 GTGPAGSFERN----GKGRSSQIL------------YDSNGRRVRSGAPGCTSSLTTSPVKNHAS 836
            ||..|.....|    .|.|....|            |:.|....||...|    :|..|..:||.
Zfish   584 GTDDAFVHLDNCVDEDKLREELFLCPVKENLLDNDQYEQNNVLDRSVLDG----ITEEPAVSHAK 644

  Fly   837 SPLAQQLLEAASSAKNDAQIL 857
               .::.|:.||....:..:|
Zfish   645 ---RKEGLDQASYEVQELHML 662

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pigsNP_572331.2 CH_GAS2L1_2 11..163 CDD:409117
GAS2 257..325 CDD:460480
clmnbNP_001003605.1 CH_SF 25..138 CDD:469584 3/18 (17%)
CH_CLMN_rpt2 192..297 CDD:409094 18/104 (17%)
Blue background indicates that the domain is not in the aligned region.

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