DRSC/TRiP Functional Genomics Resources

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Protein Alignment pigs and Ppl

DIOPT Version :10

Sequence 1:NP_572331.2 Gene:pigs / 31596 FlyBaseID:FBgn0029881 Length:977 Species:Drosophila melanogaster
Sequence 2:NP_001100446.1 Gene:Ppl / 302934 RGDID:1305511 Length:1754 Species:Rattus norvegicus


Alignment Length:597 Identity:111/597 - (18%)
Similarity:180/597 - (30%) Gaps:229/597 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   468 RRLIDMRKKQSSLDSYSS--------GPKSLP-----------------------------GYSC 495
            |.|.|..|   :||.|..        |.:.||                             |||.
  Rat   360 RELDDQEK---ALDKYEDVVRGLQKRGQQVLPLKYRRETPLKPIPVEALCDFEGDQGLISRGYSY 421

  Fly   496 SMEEANGGS--------------------------------GVGSAAGGVSSGSAGSGVAGEQGG 528
            ::::.||.|                                .:||....|...:|||..|.:|  
  Rat   422 TLQKNNGESWELTDSTGKKLMAPAVCFIIPPTDPEALALSDSLGSQYRSVRQKAAGSKHALQQ-- 484

  Fly   529 ANKFENI-SDNGSEISDEGYRSLGVIQSGAQKRESLHSQASIEDAESNARLDQTSSD-------- 584
              :.|.: ::|..:.||            .|.|:.|            |.|||.:||        
  Rat   485 --RHEVLRTENPGDASD------------LQGRQLL------------AGLDQVASDLDRQEKAI 523

  Fly   585 --------SQISPSDEPAEKA------TTDILEEEDLNGQDREEDQEDYSVCDGPQSLPAILSGA 635
                    .|....::.||:|      |.::|:.|....|...|.:.......|..:.|.:.:..
  Rat   524 TGILRPPLEQGRAIEDSAERAKHLKNITNELLQIEPEKIQRTAECEAFVQALPGSGTTPLLKTRV 588

  Fly   636 HKLSDKFEQSGVFITDDEITVDIAKTEDQSVAN------TMGNPTPNLSKIPRSP-LAQRRRRSI 693
            ...:.|:::....:...:..||:|...:.|:..      :..|.......||.|. :...:|:.:
  Rat   589 EDTNQKYKRLVQLLEAAQEKVDVANRLENSLQRGRELLASHENRLMQDDTIPESDYMLDSKRQEL 653

  Fly   694 D---------NSTCGGAGGSLQ-------DLSSRSGLPAPAFSRKQPVYRSVRTR-NSTGATTTP 741
            :         .|..|....:||       .|:||.....|...|::.....:..| |:.....  
  Rat   654 EAMASELQAQKSLLGEVEQNLQVAKQCSSSLASRFQEHCPDLERQEAEVHKLNQRFNNLNQQV-- 716

  Fly   742 VAPPRSRQATQLPMVRDVTNTWSGRTTGAPKRRPPCTADTFVAPTNGTGPAGSFERNGKGRSSQI 806
                 .|:|..|...||..:.:             |                    .|.....|.
  Rat   717 -----ERRAQSLQSARDAYSEY-------------C--------------------RGYDHVLQF 743

  Fly   807 LYDSNGRRVRSGAPGCTSSLT--TSPVKNHASSPLAQQLLEAASSAKNDAQILEKMKSLLSRYAA 869
            |.     :..|..|..|.||:  .:.:||.      :.||:..:|.:..||.:         ||.
  Rat   744 LV-----KTPSYEPQETDSLSQMETKLKNQ------KNLLDEIASMEQGAQKV---------YAD 788

  Fly   870 GNQTKAGVGATATAANKINS-----NGKKTPVYEDFTTAWVHSNGNLERSESCSPPAKARSKRSS 929
            ..|.:..|......|.|:.|     ||:.:           |.|   :|:...||.||.:.:.::
  Rat   789 SQQYQQAVKDYELEAEKLRSLLDLENGRNS-----------HVN---KRARLQSPAAKVKEEEAA 839

  Fly   930 -AASSCESNNSN 940
             ||...|.|..|
  Rat   840 LAAKFTEVNAIN 851

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pigsNP_572331.2 CH_GAS2L1_2 11..163 CDD:409117
GAS2 257..325 CDD:460480
PplNP_001100446.1 SPEC 213..387 CDD:413338 8/29 (28%)
SH3_10 388..451 CDD:407754 7/62 (11%)
Smc <583..>1134 CDD:440809 63/343 (18%)
SMC_prok_B 902..1638 CDD:274008
PLEC <1655..1683 CDD:197605
Blue background indicates that the domain is not in the aligned region.

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