DRSC/TRiP Functional Genomics Resources

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Protein Alignment pigs and M116.5

DIOPT Version :10

Sequence 1:NP_572331.2 Gene:pigs / 31596 FlyBaseID:FBgn0029881 Length:977 Species:Drosophila melanogaster
Sequence 2:NP_501432.4 Gene:M116.5 / 177642 WormBaseID:WBGene00019792 Length:1020 Species:Caenorhabditis elegans


Alignment Length:386 Identity:91/386 - (23%)
Similarity:154/386 - (39%) Gaps:89/386 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 MRKNEKHVILCLLEVARRGAKFGMLAPMLVQMERQIDREIAADIKA--------NGAGCSEN--- 193
            ::.:..|:...|.|:::..|.  ..:|.|:...:|:.::| ..:|.        .....||:   
 Worm   680 LQADADHIFKALEEISKDEAL--QESPSLLLDSKQVSKKI-EQLKVLLKPVEEKKDTFISESKLV 741

  Fly   194 ----GTQTDALETGNSSAATMTTITTTTVETDLYDDSDDSETEDDG------DQNPVLMYGPQPQ 248
                |.::||.|..:         ....|| |.|.|..:..::.:|      ..|.:.....:.:
 Worm   742 MKTVGPESDAKELDS---------LMKHVE-DAYSDVVELISDKEGLIDRCNASNRIAHPQTETE 796

  Fly   249 IITNDLKSLDEMVRDLVEKCTCPSQFPMVRVSEGKYRIGDTKVLIFVRILRSHVMVRVGGGWDTL 313
            .|||:::.|.       |.|:|.:.:.:.::||..||.|||.:...||||||.|||||||||:.|
 Worm   797 KITNEIELLK-------ETCSCCTPYQIEKISENYYRFGDTHIKRMVRILRSTVMVRVGGGWEPL 854

  Fly   314 SHYLDKHDPCRCRAQHRSSVAARLIPRQSPNHNPSNGIEL--------HKAQVIFERSPPAARRV 370
            ...|.||||||.:        .||.....|...|.:.::|        |..|:....:|....::
 Worm   855 EESLQKHDPCRTK--------GRLNINMFPEARPIHALDLMQSFTKNRHAKQMPIAGTPGPIMKI 911

  Fly   371 FNSPNCNGGPGTGSSCGTGVVGVAVPPTLQNGHSLSPNSGKYRSRSP-----TPQRKFLNQQANG 430
            ..... ...|.:|...||.            |::::..|.:...:.|     ||..|...:|:..
 Worm   912 REKTE-RSVPMSGGLGGTA------------GYTVTTESPRKTPQRPFRIPRTPSDKTPGRQSRV 963

  Fly   431 GGIASATGSSQTVTTDTSSGQLLGSPSLARRSMSPSPRRLIDMRKKQSSLDSYSSGPKSLP 491
            |.:::...|             :..||...:|.|.:...:.| |:|:.||.....|.:..|
 Worm   964 GCVSNLKNS-------------IVEPSSPSQSESRASPEVAD-RQKRISLSLKEKGKRYSP 1010

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pigsNP_572331.2 CH_GAS2L1_2 11..163 CDD:409117 4/22 (18%)
GAS2 257..325 CDD:460480 33/67 (49%)
M116.5NP_501432.4 CH_PLEC-like_rpt1 38..142 CDD:409037
CH_SF 179..285 CDD:469584
CH_SF <422..469 CDD:469584
CH_SF <604..657 CDD:469584
GAS2 796..868 CDD:128539 37/86 (43%)
Blue background indicates that the domain is not in the aligned region.

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