DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pigs and gas2l2

DIOPT Version :9

Sequence 1:NP_001245550.1 Gene:pigs / 31596 FlyBaseID:FBgn0029881 Length:977 Species:Drosophila melanogaster
Sequence 2:XP_002933878.3 Gene:gas2l2 / 100488990 XenbaseID:XB-GENE-960572 Length:974 Species:Xenopus tropicalis


Alignment Length:1110 Identity:305/1110 - (27%)
Similarity:433/1110 - (39%) Gaps:361/1110 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RPYRPFKSSEEYLEAMREDLAEWLSTLYPELSINADNFMDRLDTGVALCKHANYV----RQAAVD 67
            |..||||||||||.||:|||||||..:| .|.:..|||::.|..|..||:|||.|    |:.||.
 Frog    10 RSIRPFKSSEEYLYAMKEDLAEWLKDMY-NLEVFVDNFIEILGNGSVLCQHANNVTEVAREFAVQ 73

  Fly    68 Y--LARRQARNKSMTRSMTSGLAGPILAMGNVHYLPAAKSGTFFARDNVSNFITWCRKSLKIIEC 130
            |  ||.:....||          |..|.|       .|:.|||.|||||||||.||||.:.|.:.
 Frog    74 YPHLAEKLQLPKS----------GVKLNM-------MAQPGTFLARDNVSNFIQWCRKEMDIKDV 121

  Fly   131 LLFETDDLIMRKNEKHVILCLLEVARRGAKFGMLAPMLVQMERQIDREIAADIKANGAGCSENGT 195
            |:|||:||::|||||:.:|||||:|||.::|||.||||:|||.||:.||                
 Frog   122 LMFETEDLVLRKNEKNFVLCLLELARRASRFGMSAPMLIQMEEQIEEEI---------------- 170

  Fly   196 QTDALETGNSSAATMTTITTTTVETDLYDDSDDSETEDDGDQNPVLMYGPQPQIITNDLKSLDEM 260
                                                .::.|..|..:..|:||....|.|:||:|
 Frog   171 ------------------------------------REEMDLPPQEIPVPKPQRKLCDFKNLDQM 199

  Fly   261 VRDLVEKCTCPSQFPMVRVSEGKYRIGDTKVLIFVRILRSHVMVRVGGGWDTLSHYLDKHDPCRC 325
            |:.||.:||||.||.|::||||||::|::..||||||||:|||||||||||||.|||||||||||
 Frog   200 VQHLVSRCTCPVQFSMIKVSEGKYKVGESSTLIFVRILRNHVMVRVGGGWDTLEHYLDKHDPCRC 264

  Fly   326 RA-QHRSS---------------VAARLIPRQSPNHNPSNGIELHKAQVIFERS----PPAARRV 370
            .: .|:.:               |..||.||..   |||.    .:..:|..||    ||...|.
 Frog   265 TSLSHKPAIKLGSLQKQLSAVHEVKTRLTPRLD---NPSK----LETTLIVSRSQSPLPPVEWRT 322

  Fly   371 FNSPNCNGGPGTGSSCGT--------GVVGVAVPPTLQNGHSLSPNSGKYRS--RSPTPQRKFLN 425
            ::|    |...|.||..:        |...:..||..:...|.|     ||:  ||.||.||.. 
 Frog   323 YSS----GRSRTLSSSNSLDDNENSPGFKTLQTPPNDRRSMSTS-----YRAHERSATPSRKLF- 377

  Fly   426 QQANGGGIASATGSSQTVTTDTSSGQLLGSPSLARRSMSPSPRRLIDMRKKQSSLDSYSSGPKSL 490
                              |.|....|.|.:|       .|...|   .....|||.|..:|    
 Frog   378 ------------------TEDNREPQQLATP-------RPGHYR---HHHSTSSLASQLTG---- 410

  Fly   491 PGYSCSMEEANGGSGVGSAAGGVSSGSAGSGVAGEQGGANKFENISDNGSEISDEGYRSL----- 550
                  .||.|      |....|.|.|.    :|:|.|.:.|.::.:  ..:.|..||.:     
 Frog   411 ------SEEEN------SCISEVFSESQ----SGKQMGKSTFTSLKE--PSVKDASYRKVMSATE 457

  Fly   551 -GVIQSGAQK-RESLHSQAS--------------------IEDAESNARLDQTSSDSQISPSDEP 593
             ..||.|::. .:|::||.|                    :::.:|.. |:|......|..:..|
 Frog   458 PSNIQQGSRNVHQSINSQDSRPKTPSRFIRPPSPSKQIHFVQNQQSKG-LEQNPKAQTIGYTRSP 521

  Fly   594 AEKATTDILEEEDLNGQDREEDQEDYSVCDGPQSLPAILSGAHKLSDKFEQSGVFITDDEITVDI 658
            :....|::                .||......|..:..|..:|.:||...:.:..:::.:....
 Frog   522 SPVKQTNL----------------TYSRRPATPSRISCGSSQYKETDKSVANEIITSNNYVKTKP 570

  Fly   659 AKTEDQSVANTMGNPTPNL-----------SKIPRSPL-AQRRRRSIDNSTCGGAGGSLQDLSSR 711
            :.:.::.:..| |..||.:           .|:...|| .||:..:|:.|.      |::.....
 Frog   571 SVSSEERIIRT-GRATPTIHLNKNGIMQSEHKVSNLPLRMQRKPEAIETSQ------SIERDCMY 628

  Fly   712 SGLPAPAFSRKQPVYRSVRTRNSTGATTTPVAPPRSRQATQLPMVRDVTNTWSGRTTGAPKRRPP 776
            :.||......|| :|||:....   .|...|....|.::.....::|.                 
 Frog   629 TPLPIDPEQEKQ-IYRSLEDEI---LTNIKVLEGESEESNPENRLKDF----------------- 672

  Fly   777 CTADTFVAPTNGTGPAGSFERNGKGRSSQILYDSNGRRVRSGAPGCTSSLTTSPVKNHASSPLAQ 841
             |:|..||     ....:.:.|...:|:|:                 |||.|      ...|:.|
 Frog   673 -TSDCGVA-----SDTAARDLNMPEKSTQL-----------------SSLCT------LKKPMGQ 708

  Fly   842 QLLEAA---------SSAKNDAQILEKMKS--LLSRYAAGN-----QTKAGV-GATATAANKINS 889
            :.:..:         |.|..|..|.|..|.  .|:|....|     .:|..| .|..:..||:..
 Frog   709 EGVPRSGVYINTTWQSGASYDDVITELTKGHVKLNRVDVENWISKIPSKGIVKEADTSQRNKVCE 773

  Fly   890 NGKKTPVYEDFTTAWVHSNGNLERSESCS-----------PPAKAR----SKRSSAASSCESNNS 939
            ||....|          ....|.|.::.|           |..:||    ..:.....:...|.:
 Frog   774 NGHSAAV----------PQRTLARKKTLSTEMKGSKPKQLPSQRARQLALENKKKMVENVSENQA 828

  Fly   940 NAGAGSGAAAGSASV-----------------------------VSPRR----ERGMSKIPAPVR 971
            :..:|:...|....:                             :.|||    |:..|:||.||.
 Frog   829 STVSGNSEDAVEEKIKLPQGLKPKRSLKKPERVPSIYKLKLRPKIRPRRDNRPEKKASRIPTPVS 893

  Fly   972 HHTEL 976
            :...|
 Frog   894 YRQAL 898

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pigsNP_001245550.1 CH 22..159 CDD:237981 69/142 (49%)
GAS2 258..325 CDD:280367 49/66 (74%)
gas2l2XP_002933878.3 CH_GAS2L1_2 14..154 CDD:409117 80/157 (51%)
GAS2 196..264 CDD:396660 50/67 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 116 1.000 Domainoid score I5888
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1343422at2759
OrthoFinder 1 1.000 - - FOG0001647
OrthoInspector 1 1.000 - - otm49271
Panther 1 1.100 - - LDO PTHR46756
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3764
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.020

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