Protein Alignment pigs and clmna

DIOPT Version :10

• Sequence 1: NP_572331.2
• Gene: pigs / 31596
• FlyBaseID: FBgn0029881
• Length: 977
• Species: Drosophila melanogaster
• Sequence 2: XP_002665206.2
• Gene: clmna / 100330495
• ZFINID: ZDB-GENE-131127-546
• Length: 1103
• Species: Danio rerio
• Alignment Length: 979
• Identity: 184/979 - (18%)
• Similarity: 301/979 - (30%)
• Gaps: 340/979 - (34%)

  Fly   147 VILCLLE-VARRGAKFGM---------------------LAPMLVQMERQIDREIAADIKANGAG 189
            ||..||: |.||..|:|:                     :.|.||.|.|...|....:|:
Zfish   191 VIKTLLQWVQRRTRKYGVAVQDFGKSWTSGLAFLAVIKSIDPSLVDMRRSFLRTPRENIE----- 250

  Fly   190 CSENGTQTDALETGNSSAATMTTITTTTVETDLYDDSDDSETED----DGDQNPVLMYGPQ---- 246
                    :|..|.:.|......:                |.||    ..|:..::.|..|
Zfish   251 --------EAFRTAHYSLGIPKLL----------------EPEDVMLNPPDEQSIMTYVSQFLEH 291

  Fly   247 -PQIITNDLKSLDEMVRDLVEKCTCPSQFPMVRVSEGKYRIGDTKVLIFVRILRSHVMVRVGGGW 310
             |.|..:|...:.|.                   |:.:.|:.|..|...|:..|...||:    .
Zfish   292 FPGIEEDDTSDIRER-------------------SKARARMDDAPVRNGVQRKRETYMVK----R 333

  Fly   311 DTLSHYLDKHDPCR----CRAQHRSSVAARLIPRQSPNHNPSNGIELHKAQVIFERSPPA-ARRV 370
            |::      |.|.:    ..::.|..:.:.:: .|:|...|..    |:...:.....|| .:.|
Zfish   334 DSV------HPPPKIFISSVSEEREQIPSPVL-LQTPEDRPWT----HEESTMGPSPSPANDQPV 387

  Fly   371 FNSPNCNGGPGTGSSCGTGVVGVAV--PPTLQNGHSLSPNSGKYRSRSPTPQRKFLNQQANGGGI 433
            :...:.|....|.||....:...||  |.:....||.:.||.:. :..|..:|
Zfish   388 YPPLDLNKDTPTTSSPQPSLSDSAVNSPDSWSEVHSETTNSHRV-TEEPMSER------------ 439

  Fly   434 ASATGSSQTVTTD---------TSSGQL------------LGS-PSLARRSMSPSP-----RRLI 471
             ..||:.: ||:|         |...||            ||| .||..:|::.|.     :.::
Zfish   440 -DTTGTVE-VTSDLGSPFSPESTPENQLDRELFIDEGNYSLGSMDSLHAKSIAVSEEDDAYKYIL 502

  Fly   472 DMRKKQS----------------SLDSYSSGPK---SLPGYSCSMEEANGGSGVGSAAGGVSSGS 517
            |::::||                |...|..|.|   .:|  ||.  |::.|....|..|..:...
Zfish   503 DLKEEQSNNPLPRDESCLEDSKTSPSGYHEGEKPTSEVP--SCL--ESDSGFFQDSKEGIPAQPE 563

  Fly   518 AGSGV---AGEQGGANKFENISDNGSEISDEGYRSLGVIQSGAQKRESL-------------HSQ 566
            .||.:   ..|:..::.|::  ||.|..:....|.......|.:|:...             :.:
Zfish   564 IGSPLLSPVDEEIISDPFQD--DNESSNTQAIQRDTLERTDGPEKKPVTFEYDSEPECPVLQYER 626

  Fly   567 ASIEDAESNARLDQTSSDSQISPSDEPAEKATTDILEEEDL-NGQDREEDQEDYSVCDGPQSLPA 630
            .||..:|.:.:|   .:|....|::||:         :.|| ||.....:..|::  .|.|:  .
Zfish   627 VSISGSEEDIKL---CTDLTEEPTEEPS---------KNDLANGHSETNEDSDFN--HGEQA--G 675

  Fly   631 ILSGAHKLSDKFEQSGVFITDDEITV------DIAKTEDQSVANTMGNPTPNLSK---------I 680
            :|        |.|...|...|.|.||      |:...::..|....|.|....|.         :
Zfish   676 VL--------KSEVKDVVFDDQEKTVSDQSQSDVEVHDEDQVCYMCGGPVMKSSGDSCEQGDYCL 732

  Fly   681 PRSPLAQR----RRRSIDNSTCGG------------AGGSLQDLSS----RSGL--------PAP 717
            ..|...:|    ..|....|..||            ..|::.||.:    |.|:        .:.
Zfish   733 SHSSSTERDCNSDSRHFTESDAGGNFEDNPREQNNELNGTVSDLKNEPRERKGIREDRLVIGKSD 797

  Fly   718 AFSRKQPVYRSVRTRNSTGAT-------TTPVAPPRSRQATQLPMVRDVT----------NTWSG 765
            ..:....:.|:..:.|..|.:       |.|.....:|..:.:...:.||          |...|
Zfish   798 LENGSDGIRRTEFSHNINGESQAQVSDNTVPGGDQNNRPLSVVDSRKSVTEALLDPLSDSNITDG 862

  Fly   766 R--------------------------TT-----------GAPKRRP-PCTADTFVAPTNGTGPA 792
            .                          ||           |.|:||| .......:.|.....|.
Zfish   863 EKDSILTQSPLRHFPELSSIESLIEPDTTCEDAEPIIGVRGFPERRPAELRLSLSMTPLQPAPPK 927

  Fly   793 GSFERNGKGRSSQILYDSNGRRVRSGAPGCTSSLTTSPVKNH--------ASSPLAQ-QLLE--- 845
            .||..:...........|||.:.:.|..|.......||...|        ..||... :|::
Zfish   928 RSFTESDTDTEDASEDHSNGYKSKKGRAGSLLLQEQSPFDRHPGEWGAVEPDSPAEHCELIKTDD 992

  Fly   846 ---AASSAKNDAQI----------------LEKMKSLLSRYAAGNQTKAGVGATATAANKINSNG 891
               .|.:.:|...:                |.|:...........:|..|:...||..||  |:.
Zfish   993 DLIGAGARENTGALREGTVTDASPLLTTIHLRKIDDSSELKGQNGKTLDGIKVDATIINK--SSE 1055

  Fly   892 KKTP 895
            :|:|
Zfish  1056 RKSP 1059

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pigs	NP_572331.2	CH_GAS2L1_2	11..163	CDD:409117	8/16 (50%)
		GAS2	257..325	CDD:460480	12/71 (17%)
clmna	XP_002665206.2	CH_SF	30..143	CDD:469584
		CH_CLMN_rpt2	188..293	CDD:409094	25/130 (19%)
		MSCRAMM_ClfA	<384..784	CDD:468110	90/444 (20%)