DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment APC7 and APC7

DIOPT Version :10

Sequence 1:NP_572329.3 Gene:APC7 / 31594 FlyBaseID:FBgn0029879 Length:615 Species:Drosophila melanogaster
Sequence 2:XP_308135.5 Gene:APC7 / 1269494 VectorBaseID:AGAMI1_009012 Length:585 Species:Anopheles gambiae


Alignment Length:608 Identity:169/608 - (27%)
Similarity:293/608 - (48%) Gaps:70/608 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LFANAKKLYDHKLYECVIPAADLLRTVLKNDRYVATLDVEYQVLLYLLNANYKERNYRAALRHFD 79
            ||...|.|:|::||......|:|:.::...:|...:....:..|:|...:.:.||.:|.|...:.
Mosquito     4 LFEQLKTLFDYELYSNAATLANLIISIYDTNRATLSPQEHFGTLVYYAESLFHERRFREAETIYR 68

  Fly    80 EIIHKRRLMMRHKNAVLVAIESSYPE----FGDAEQRRRAA------ECYRQIGNTDMAIETLLQ 134
            :.:..:||:.::|:........|.|.    ..:.|.:.:.|      :|||.      ||..|..
Mosquito    69 QALQLKRLLTKNKSPNCKTTAGSVPGPVDLQSEVELKYKTARCLIEMKCYRD------AIVLLQS 127

  Fly   135 VPPTLRSPRINLMLARLQHHGSRHGTTKKSEAVLAYKEVIRECPMALQVIEALLELGVNGNEINS 199
            :....|:|::|::|::|.|:   ||  .:..|:..||||::|||:|.:.||.||.|||.|.|:||
Mosquito   128 LALKQRTPKVNMLLSKLCHN---HG--HERSAIGTYKEVLKECPLAFEAIEGLLTLGVKGIEVNS 187

  Fly   200 LVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGD 264
            :::.|...|...:|:|.||||.|.:...|:::|.||...:..||.||....|::.:|:|.|:|||
Mosquito   188 MIVDATMAPQCSEWMSSWIKAHANIQARKYTEAIQTLRSIEANTCLRNYHQLLVLIGECYYHNGD 252

  Fly   265 YFQAEDIFSSTLCANPDNVEAIGLMAVLCGQEGGCEQDSADMDYLFAKVSSEV-KYTASHWFAHA 328
            |.||...........|.:...:.::|:|..:    .:..|:::.|.....|.: :||:..|:...
Mosquito   253 YEQAYITLKRAHAMQPQSKNGLQILALLMAK----NKKIAELEKLITPSPSLLNEYTSEMWYVMG 313

  Fly   329 QLLYDEGKFERGLNFVEKCLDSEPRNHEALILRGRLLIALERHTQAVCAFRTAQMVAPYRFEIYR 393
            |.|:..||:|:.:.||:|......||.|||:|:..:|..::::.|.:...|..|..||||:||::
Mosquito   314 QYLFATGKYEKAVYFVQKACFQNSRNVEALVLKAEVLFQVKKYQQGIAHLRYGQQFAPYRYEIHK 378

  Fly   394 GLFHSYLAQKRFKEANALCNWTIRLFQNSPRSFTMFGRTLFLFPDPRMRRTARKFAEKSLKINHI 458
            .|..:||...|.:||.......:::...|.|...:..||  ...|...|..|:....|:|:::..
Mosquito   379 ALVDNYLNMGRNREAQLQALKAVKMLGESARMLVLLART--YMKDEAARPKAKALCLKALEMSEN 441

  Fly   459 YTPAVNLIADICQVEGPTKAIIKLLEKHVIIFPKVNLLNHLGDIMRKQKEPVKAMEYYYKALRQD 523
            :.|||.|:::|...|......:|||:|||::.....|...|.:.:..:|:...|:|:|..||..|
Mosquito   442 FLPAVYLLSEIYLRENDISTRMKLLKKHVMLSKNSKLHVMLAETLNNEKDHSGALEHYSIALNLD 506

  Fly   524 PKSKRTLRGLRLLAKSDDESPVLDESDDIGMDNQQSINDLTTLCEATNAQGAEGAESVENSREAS 588
            |.::..:.||.::.::                                    :|..|     .::
Mosquito   507 PSNRVAMSGLLMVGQN------------------------------------KGGTS-----SSA 530

  Fly   589 SSAAARSGQEEDVDEHDWIDVPD 611
            |:|.|.|...|.:.| |..||||
Mosquito   531 SNAGASSSYLESMAE-DGSDVPD 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
APC7NP_572329.3 CpoB 34..135 CDD:441335 22/110 (20%)
LapB 108..411 CDD:442196 102/309 (33%)
TPR repeat 251..277 CDD:276809 10/25 (40%)
LapB 254..523 CDD:442196 77/269 (29%)
TPR repeat 321..349 CDD:276809 9/27 (33%)
TPR repeat 354..384 CDD:276809 9/29 (31%)
TPR repeat 459..489 CDD:276809 12/29 (41%)
TPR repeat 493..521 CDD:276809 7/27 (26%)
APC7XP_308135.5 None

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