DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17717 and Marchf6

DIOPT Version :9

Sequence 1:NP_572327.1 Gene:CG17717 / 31592 FlyBaseID:FBgn0029877 Length:266 Species:Drosophila melanogaster
Sequence 2:XP_008759048.1 Gene:Marchf6 / 294862 RGDID:1565757 Length:914 Species:Rattus norvegicus


Alignment Length:184 Identity:43/184 - (23%)
Similarity:65/184 - (35%) Gaps:49/184 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 CRICRWNRNDMEIIKCPCNCKGSVGYIHLKCLKRWIMHRRDNRCEICNAVFN------------- 142
            ||:||......:.:..||.|.||:.:||.:||.:|:.|.|...||:|...|.             
  Rat     9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPDMPSRL 73

  Fly   143 -----IAEERASLKQMIR-----TFCCGRCCGLI------VKHLLFSASLMPLAHIILQQVLQCM 191
                 .|....|:...||     |.......|::      :...||:.|:..|..:.|..:    
  Rat    74 PIQDIFAGLVTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLFTGSVSSLLTLPLDML---- 134

  Fly   192 DNMNQGSTDQL---TVQEVFVASCALLTSSALFFHFFEFVTTRFMLIRNILSHW 242
                  ||:.|   .:|..||.:|.|..       |...|..|..::......|
  Rat   135 ------STENLLADCLQGCFVVTCTLCA-------FISLVWLREQIVHGGAPIW 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17717NP_572327.1 RINGv 91..138 CDD:128983 18/46 (39%)
Marchf6XP_008759048.1 RING_CH-C4HC3_MARCH6 8..57 CDD:319616 19/47 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5183
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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