DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34417 and Specc1l

DIOPT Version :9

Sequence 1:NP_001259282.1 Gene:CG34417 / 31591 FlyBaseID:FBgn0085446 Length:5182 Species:Drosophila melanogaster
Sequence 2:NP_001139298.1 Gene:Specc1l / 74392 MGIID:1921642 Length:1135 Species:Mus musculus


Alignment Length:1248 Identity:260/1248 - (20%)
Similarity:459/1248 - (36%) Gaps:321/1248 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  4125 KKRPSLPNAMDPGTAAP-------PRQVYQAPP-----PPTNISFTYADFPPVRRPQGASAHNYR 4177
            |::|.:..|.....:.|       |:.|.::.|     .||.:.       |||....|:....:
Mouse    13 KRQPRMKKANRSAGSVPKVSGISKPQTVEKSKPENSSSAPTGVK-------PVRPGAAAALSKTK 70

  Fly  4178 SQPCLTSAVDQVEALTNPLGAPLVLTSSNPTYLPPPGSRRFDYISSPVDVDADSPPNSPTSFMTM 4242
            |...|.:.:.....:||.:.|.....||                         :.|::|...||:
Mouse    71 SNDDLLAGMAGGVNVTNGIKAKKSTCSS-------------------------AAPSAPAPAMTI 110

  Fly  4243 -PNPTLMTDNTDDDL-------DLDSDNNMLEYRAETK------------------VMRKPRSQT 4281
             .|.:.::..|....       :.:|.:.....|..|:                  :.::.||:|
Mouse   111 SENKSKISTGTSSSAKRSTSAGNKESSSTRERLRERTRLNQSKKLPSVSQGANDVALAKRSRSRT 175

  Fly  4282 AVRVADRRNAHMSDDEVYGKNSRAA--KSLLYTMK------------------QLGGGPGNASVG 4326
            |.....|.:...||:::..|.:..|  |.||...|                  |||....:....
Mouse   176 AAEGDIRMSKSKSDNQISDKAALEAKVKDLLTLAKTKDVEILHLRNELRDMRAQLGISEDHCEGE 240

  Fly  4327 NSGQRRQPLTAPSSPKSGCLSPDGRPYQAPLVEPLFPQL---STFEPKRQPQFANSPMSTPPAV- 4387
            :..:.::.:.|               :|...||....||   :|...:...|..|........: 
Mouse   241 DRSEVKETIIA---------------HQPTDVESTLLQLQEQNTAIREELNQLKNENRMLKDRLN 290

  Fly  4388 ------------SMPSINYQA-NPTYTPPRSNQNSNSYLGETNTSYVVTYPLDDSGDEPEPESMA 4439
                        |.....||: :|..||  .||:..   |.|.||.|         :...|.|:.
Mouse   291 ALGFSLEQRLDNSEKLFGYQSLSPEITP--GNQSDG---GGTLTSSV---------EGSAPGSVE 341

  Fly  4440 TSVSQRLRRTSEHSNASSSLSLGSTSWTANPVHNTVPSVPLDSAMG----------PPVDRSTK- 4493
            ..:||......:|.:::|..:|.|   ..:.|:.  |....|.|:.          |.::||.| 
Mouse   342 DLLSQDENTLMDHQHSNSMDNLDS---ECSEVYQ--PLTSSDDALDAPSSSESEGVPSIERSRKG 401

  Fly  4494 --PQVSQPVGPKMPQHVAQKQIPQQLPNQLPQQIPQQLPKQLPQQIPQQL---PQQLPQQ---LP 4550
              ...|:.....:.:.:.|.:..|...::..|...|:|...  |||.|:|   .::|.::   |.
Mouse   402 SSGNASEVSVACLTERIHQMEENQHSTSEELQATLQELADL--QQITQELNSENERLGEEKVILM 464

  Fly  4551 KQLPQQIPPQLPKQLPQQIPQPELPQQLPNNLPRHAPKLSSRSHTIQGD--SGYENRPLQNRVMS 4613
            :.|.||  ....:...:||      :...:.|..|     ..|:.|..|  || ....|:.|.|.
Mouse   465 ESLCQQ--SDKLEHFGRQI------EYFRSLLDEH-----HISYVIDEDVKSG-RYMELEQRYMD 515

  Fly  4614 ---------QQTLNSSIITSNNHTTVQKQQKE--QHINELRRKS--LGNVLESSQR------STY 4659
                     :|.|......||.....::..||  :.|..|:.:|  :..::||.|:      :|.
Mouse   516 LAENARFEREQLLGVQQHLSNTLKMAEQDNKEAQEMIGALKERSHHMERIIESEQKGKAALAATL 580

  Fly  4660 FEQEYKSSAPPDTPDI--VKSSLPKEDAPLLKKFG-------------------PPQRHHYMPNS 4703
              :|||::...|..::  :|:.|..|...:.:.:.                   ..::...:.:|
Mouse   581 --EEYKATVASDQIEMNRLKAQLENEKQKVAELYSIHNSGDKSDIQDLLESVRLDKEKAETLASS 643

  Fly  4704 YQSPQLNKQGNSNSTTTSSTSVRSTTVVQQQHHQQQHQQIKPSI------VETPATPQPQVPP-- 4760
            .|....:.:.::|....:...|.......|:..::|.:.:..::      :|...|.:..:..  
Mouse   644 LQEDLAHTRNDANRLQDTIAKVEDEYRAFQEEAKKQIEDLNMTLEKLRSELEEKDTERSDMKETI 708

  Fly  4761 ---EDEIPH--------NIVFNNVSAFTSMSRRNHEEDSHQGTQSGSRVNRLSKCDS--WNQICQ 4812
               |||:..        |::.:::    ..:.:..::..|...:....::|..:.:|  |.|...
Mouse   709 FELEDEVEQHRAVKLHDNLIISDL----ENTVKKLQDQKHDMEREIKTLHRRLREESAEWRQFQA 769

  Fly  4813 LQQTAG--PSPAKYNQPGSPGELRRTKSGHSLAVPKLYEA------------GIDKAQVSEKQRT 4863
            ..|||.  .:..|.......|:|:|          :|:||            .|...:..|::..
Mouse   770 DLQTAVVIANDIKSEAQEEIGDLKR----------RLHEAQEKNEKLTKELEEIKSRKQEEERGR 824

  Fly  4864 VAAYFSGQKSPTGGQVEELRTSMTTTTSSRKSAINRT--KTSEKLS-----AAARKSLSSLTTTS 4921
            |..|.:..:.......:.:..|..::|||..:...:|  |:.:..|     |||....:.|:.:.
Mouse   825 VYNYMNAVERDLAALRQGMGLSRRSSTSSEPTPTVKTLIKSFDSASQVPNAAAAAIPRTPLSPSP 889

  Fly  4922 NGNVSTAGLGMVVRGGGVGGIGGGAALSRSATMPHIANLNLLDE-SNVEDAFEQLMMAQHKSSSS 4985
            ......|.:..:.|    ..|.|..:.|:..|.       |.|: ||    :.:|.:.:|...:|
Mouse   890 MKTPPAAAVSPMQR----HSISGPISTSKPLTA-------LSDKRSN----YGELPVQEHLLRTS 939

  Fly  4986 SEQRTETKSKDGGATVTTTTTKVTTRTVSGS-----------AASKNISPLAKFKQLDKQAAAQQ 5039
            |..|.        |::.......:.:|:|.|           :||:..||.:....  ...:.|.
Mouse   940 STSRP--------ASLPRVPAMESAKTISVSRRSSEEMKRDISASEGASPASLMAM--GTTSPQL 994

  Fly  5040 AQKSSPTTSTPTTPGGSAQPLFKFTDPALNARA----ATVKDQLLQWCKHKTQEYENVQINNFSS 5100
            :..||||.|  .||...::...:..|| |:|.|    .:.::.||:||:.||:.|:|:.|.||||
Mouse   995 SLSSSPTAS--VTPSTRSRIREERKDP-LSALAREYGGSKRNALLKWCQKKTEGYQNIDITNFSS 1056

  Fly  5101 SWSDGLAFCALIHHFLPDAFDYTTLTKQTRRHNFELAFSVADEKAGIAPLLDVEDMVEMSRPDWK 5165
            ||:||||||||:|.:||....|..|..|.::.||.|||..| |..||...||:.:|....||||:
Mouse  1057 SWNDGLAFCALLHTYLPAHIPYQELNSQDKKRNFTLAFQAA-ESVGIKSTLDINEMARTERPDWQ 1120

  Fly  5166 CVFVYVQSIYRRF 5178
            .|.:||.:||:.|
Mouse  1121 NVMLYVTAIYKYF 1133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34417NP_001259282.1 Smoothelin 2594..2636 CDD:289290
Smoothelin 3127..3176 CDD:289290
GBP_C <3810..3882 CDD:303769
coiled coil 3857..3868 CDD:293879
CH 5076..5179 CDD:237981 51/103 (50%)
Specc1lNP_001139298.1 SMC_prok_B 219..>843 CDD:274008 120/689 (17%)
Smc <518..819 CDD:224117 48/316 (15%)
SLAIN <839..980 CDD:373728 32/163 (20%)
CH 1033..1133 CDD:237981 50/100 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4678
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23167
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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