DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34417 and specc1l

DIOPT Version :9

Sequence 1:NP_001259282.1 Gene:CG34417 / 31591 FlyBaseID:FBgn0085446 Length:5182 Species:Drosophila melanogaster
Sequence 2:XP_012819429.1 Gene:specc1l / 733457 XenbaseID:XB-GENE-5937736 Length:1105 Species:Xenopus tropicalis


Alignment Length:1289 Identity:273/1289 - (21%)
Similarity:466/1289 - (36%) Gaps:334/1289 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  4024 PPTQQSQPPQQSQQHLQPRSATTYSNTPSPSSTATSPIGLPWVAKPKVDNSDFRRKAHHFEERSL 4088
            |...:||..::|:..   .||.|.|....|.|:         ::|.| .|.|...........|.
 Frog    15 PANNKSQATERSKSE---SSAPTASKVSRPGSS---------LSKAK-SNDDLLAGMAGGLPASN 66

  Fly  4089 RDNIEQQQQPTYPNGNNGYLQRHNSLRSKAPALSEFKKRPS-----------------------L 4130
            ...:::....:|||.......:....||.|.:.|..|:..|                       .
 Frog    67 SVKVKKNSTTSYPNSGTAMSGQEGRTRSSAGSSSNTKRSGSSGAKEVGSSRERLRERSRLTANKK 131

  Fly  4131 PNAMDPGT---AAPPRQVYQAPPPPTNISFTYADFPPVRRPQGASAHNYRSQPCLTSAVDQVEAL 4192
            |..:..||   :||.::           |....|...:|..:..|.:....:..|.:.|.::..|
 Frog   132 PQGLGVGTGEVSAPSKR-----------SRGRTDSDMIRMSKSKSDNQISDRAALEAKVKELMNL 185

  Fly  4193 TNPLGAPLVLTSSNPTYLPPPGSRRFDYISSPVDVDADSPPNSPTSFMTMPNPTLMTDNTDDDLD 4257
            .....|.::|..   |.|....|:...      ||...||.:.|...:...|.|:    .::...
 Frog   186 AKNKDAEILLLR---TELRDTRSQLGQ------DVSDKSPDDLPLIHLQEQNTTV----CEELQQ 237

  Fly  4258 LDSDNNMLEYRAETKVMRKPRSQTAVRVADRRNA------HMSDDEVYGKNSRAAKSLLYTMKQL 4316
            |.|:|.||:                    ||.||      ...||          ...||..:.|
 Frog   238 LKSENRMLK--------------------DRLNALGFSLGQQPDD----------PDKLYGFQSL 272

  Fly  4317 GGGPGNASVGNSGQRRQPL--TAPSSPKSGCLSPDGRPYQAPLVEPLFPQ-LSTFEPKRQPQFAN 4378
            |..||:.|....|.....:  :||.|                 :|.|..| .||...:|:     
 Frog   273 GINPGSHSDCGGGTLTSSVEGSAPGS-----------------MEDLLSQDESTLTGERR----- 315

  Fly  4379 SPMSTPPAVSMPSINYQANPTYTPPRSNQNSNSYLGETNTSYVVTYPLDDSGDEPEPESMATSVS 4443
                   :.||.:::.:.:..|.|..|:                    ||:.|.|...|.:..:.
 Frog   316 -------SSSMDNLDSECSEVYQPLTSS--------------------DDALDAPSSSSESEGLP 353

  Fly  4444 QRLRRTSEHSNASSSLSLGSTSWTANPV----HNTVPSVPLDSAMGPPVDRSTKPQVSQPVGPKM 4504
            ...|.....|..:|.:|:...:...:.:    |:|...  |.:.:....|..   |::|.:..:.
 Frog   354 STERSRKGSSGNASEVSVACLTERIHQMEENQHSTAEE--LQATLQELADLQ---QITQELNSEN 413

  Fly  4505 PQHVAQKQIPQQLPNQLPQQIP--QQLPKQL--------PQQIPQQLPQQLPQQLPKQLPQQIPP 4559
            .:...:|.|   |.:.|.||..  :...:||        ...|...|.:.|.......|.|:...
 Frog   414 ERLGEEKVI---LMDSLCQQSDKLELFSRQLEYAQALLDEHHIAYSLDEDLKSSRYLDLEQRYMD 475

  Fly  4560 QLPKQLPQQIPQPELPQQLPNNLPRHAPK-----------LSSRSHTIQGDSGYENRPLQNRVMS 4613
            .......::.....:.|.|.|:| :.|.:           |..|:|.::       |..:...:|
 Frog   476 LAENGRFEREQLLGVQQHLSNSL-KMAEQDNKDAQDVIRALKERNHHME-------RIAEAEQLS 532

  Fly  4614 QQTLNSSI----ITSNN------HTTVQKQQKEQHINELRRKSLGNVLESSQRSTYFEQEYKS-S 4667
            :|.|.:::    .|.|:      ......:|::|.:.||..      :.||..:::.:...:| .
 Frog   533 KQALAATLEEYKATLNSEQGECARLKALLEQEKQRVAELYS------IHSSGDASHIQNLLESVR 591

  Fly  4668 APPDTPDIVKSSLPKE------------DAPLLKKFGPPQRHHYMPNSYQSPQLNKQGNSNSTTT 4720
            :..:..:.:.|||.:|            ||     ||.      :.:.|::.:...|...:..|.
 Frog   592 SDKEKAESLASSLQEELLHARTDVNRMQDA-----FGK------LEDEYRAFREEAQKQVSELTL 645

  Fly  4721 SSTSVR-------------STTVVQQQHHQQQHQQIKPSIVETPATPQPQVPPEDEIPHNIVFNN 4772
            :...||             ..|:.:.:...:||:.:|                   :..|::.::
 Frog   646 ALEKVRHELEEKETELSDMKETIFELEDEVEQHRAVK-------------------LHDNLIISD 691

  Fly  4773 V-SAFTSMSRRNHEEDSHQGTQSGSRVNRLSKCDS--WNQICQLQQTAG--PSPAKYNQPGSPGE 4832
            | :|...:..:.|:.:     :....:||..:.:|  |.|.....|||.  .:..|.......||
 Frog   692 VENAVKKLQDQKHDME-----REIKILNRKLREESAEWRQFQADLQTAVVIANDIKSEAQEEIGE 751

  Fly  4833 LRR-----TKSGHSLAVPKLYEAGIDKAQVSEKQRTVAAYFSGQKSPTGGQVEELRTSMTTTTSS 4892
            |:|     .:....||  |..|....:.|..|:.| |..|.:..:.......:.:..:..::|||
 Frog   752 LKRQLQEALEKNEKLA--KEMENATSRKQEEERGR-VYNYMNAVERDLAALRQGMGLNRRSSTSS 813

  Fly  4893 RKSAINRT-------KTSEKLSAAARKSLSSLTTTSNGNVS--------TAGLGMVVRGGGVGGI 4942
            ..:...:|       .:|:..|.||..:.::.|..|...:|        .|.:..:.|    ..|
 Frog   814 DPAPTVKTLIKSFDNASSQAPSPAAAVAAAAATPISRTPLSPSPMKTPPAAAVSPMQR----HSI 874

  Fly  4943 GGGAALSRSATMPHIANLNLLDESNVEDAFEQLMMAQH--KSSSSSEQ-----RTETKSKDGGAT 5000
            .|..::::|  :|.:        |....::.::.:.:|  :|||||..     |..........:
 Frog   875 SGPISVAKS--LPGL--------SEKRPSYAEIPVQEHMLRSSSSSRSAASLPRVPAIDNAKSIS 929

  Fly  5001 VTTTTTKVTTRTVS---GSAASKNISPLAKFKQLDKQAAAQQAQKSSPTTSTPTTPGGSAQPLFK 5062
            |:..:::...|.:|   ||:|...:...:...||       ....||||.|  .||...::...:
 Frog   930 VSRRSSEELKRDISVPDGSSAPSLMVMTSPSPQL-------SLSSSSPTAS--VTPTARSRIREE 985

  Fly  5063 FTDP-ALNAR--AATVKDQLLQWCKHKTQEYENVQINNFSSSWSDGLAFCALIHHFLPDAFDYTT 5124
            ..|| |..||  ..:.::.||:||:.||:.|.|:.|.||||||:||||||||:|.:||....|..
 Frog   986 RKDPLAALAREYGGSKRNALLKWCQKKTEGYPNIDITNFSSSWNDGLAFCALLHTYLPAHIPYQE 1050

  Fly  5125 LTKQTRRHNFELAFSVADEKAGIAPLLDVEDMVEMSRPDWKCVFVYVQSIYRRF 5178
            ||.|.:|.||.|||..| |..||...||:.:||...||||:|:..||.|||:.|
 Frog  1051 LTNQDKRRNFTLAFQAA-ESVGIKSTLDINEMVRTERPDWQCLMTYVTSIYKYF 1103

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34417NP_001259282.1 Smoothelin 2594..2636 CDD:289290
Smoothelin 3127..3176 CDD:289290
GBP_C <3810..3882 CDD:303769
coiled coil 3857..3868 CDD:293879
CH 5076..5179 CDD:237981 55/103 (53%)
specc1lXP_012819429.1 Smc <358..789 CDD:224117 85/490 (17%)
CH 1003..1103 CDD:237981 54/100 (54%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23167
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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