DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34417 and Smtnl2

DIOPT Version :9

Sequence 1:NP_001259282.1 Gene:CG34417 / 31591 FlyBaseID:FBgn0085446 Length:5182 Species:Drosophila melanogaster
Sequence 2:NP_001177927.1 Gene:Smtnl2 / 679629 RGDID:1585960 Length:456 Species:Rattus norvegicus


Alignment Length:492 Identity:132/492 - (26%)
Similarity:190/492 - (38%) Gaps:138/492 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  4729 TVVQQQHHQQQHQQ-------------IKPSIVETPATPQPQVPPEDEIPHNIVFNNVSAFTSMS 4780
            ||.:.|...|:.|.             :...:...|.||.|  ||...:.........:.|:|  
  Rat    59 TVAELQRDNQRLQAQLERLTRQVEALGLATGVSPAPGTPSP--PPATTVTDRAPRLGTARFSS-- 119

  Fly  4781 RRNHEEDSHQGTQSGSRVNRLSKCDSWNQICQLQQTAGPSPAKYNQPGSPGELRRT------KSG 4839
               |...|                           .:|.||:..:...|..|.|||      ::|
  Rat   120 ---HATFS---------------------------LSGRSPSMEHDEVSDLEARRTSNSCIMENG 154

  Fly  4840 HSLAVPKLYEAGIDKAQVSEKQRTVAAYFSGQKSPTGGQVE-ELRTSMTTTTSSRKSAINRTKTS 4903
            |.|      :||..... ||.|.:     |.|:||....|. .||......|:.       |:.|
  Rat   155 HQL------DAGSANGS-SEVQAS-----SAQESPRPRPVSLSLRLPHQPVTAV-------TRVS 200

  Fly  4904 EKLSAAARKSLSSLTTTSNGNV--------------------STAGLGMVVRGGGVGGIGGGAAL 4948
            ||.|  ...|.|:|:.||...|                    .::.....:.|.|.|.:..|   
  Rat   201 EKFS--GETSASALSPTSAAIVGGFTPSPSEAISPWTPSPTEKSSSFTRSLSGSGYGAVTAG--- 260

  Fly  4949 SRSATMPHIANLNLLDESNVEDAFEQLMMAQHKSSSSSEQRTETKSKDGGATVTTTTTKVTTRTV 5013
            .|..:.|                    ::...:|..||:....|::...|..........|....
  Rat   261 KRKDSPP--------------------LVTPPQSPPSSQPPAMTQAPRQGERRRELVRSQTLPRT 305

  Fly  5014 SGSAASKNISPLAKFKQLDKQAAAQQAQKSSPTTSTPTTPGGSAQPLFKFTDPALNARAATVKDQ 5078
            ||:.|.|     |.|::.::..|::..              |..:...|.:.....|.|:::|..
  Rat   306 SGAQARK-----ALFEKWEQDTASKGK--------------GETRAKLKRSQSFGVASASSIKQI 351

  Fly  5079 LLQWCKHKTQEYENVQINNFSSSWSDGLAFCALIHHFLPDAFDYTTLTKQTRRHNFELAFSVADE 5143
            ||:||:.||..|::|.:.|||||||||:|||||:|.|.||||||..|:...|:.||||||::|:.
  Rat   352 LLEWCRSKTVGYQHVDLQNFSSSWSDGMAFCALVHSFFPDAFDYNALSPTQRQKNFELAFTMAEN 416

  Fly  5144 KAGIAPLLDVEDMVEMSR-PDWKCVFVYVQSIYRRFR 5179
            .|....|::||||:.|.| ||..|||.||||:|...|
  Rat   417 LANCERLIEVEDMMVMGRKPDPMCVFTYVQSLYNHLR 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34417NP_001259282.1 Smoothelin 2594..2636 CDD:289290
Smoothelin 3127..3176 CDD:289290
GBP_C <3810..3882 CDD:303769
coiled coil 3857..3868 CDD:293879
CH 5076..5179 CDD:237981 58/103 (56%)
Smtnl2NP_001177927.1 PRK09039 <8..>84 CDD:181619 5/24 (21%)
CH_SMTNL2 347..453 CDD:409110 58/105 (55%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 141 1.000 Domainoid score I4593
eggNOG 1 0.900 - - E2759_KOG4678
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001328
OrthoInspector 1 1.000 - - otm45358
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.810

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