DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34417 and specc1la

DIOPT Version :10

Sequence 1:NP_001259282.1 Gene:CG34417 / 31591 FlyBaseID:FBgn0085446 Length:5182 Species:Drosophila melanogaster
Sequence 2:NP_001034905.1 Gene:specc1la / 561775 ZFINID:ZDB-GENE-060810-139 Length:1132 Species:Danio rerio


Alignment Length:874 Identity:204/874 - (23%)
Similarity:336/874 - (38%) Gaps:189/874 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  4429 SGDEPEPESMATSVSQRLRRTSEHSNASSSLSLGSTSWTANPVHNTVPSVPLDSAMGPPVDRSTK 4493
            ||.....:|.::.|.|.:..:.:..:|.|.....|:|               :|..|||..||:.
Zfish   322 SGSTDNLDSESSEVYQAVTSSDDALDAPSGCGSSSSS---------------ESEGGPPACRSSS 371

  Fly  4494 PQVSQPVGPKMPQHVAQKQIPQQLPNQLPQQIPQQLPKQLPQQIP--QQLPQQLPQQLPKQLPQQ 4556
            .:.|.....::......::|.|...||  ....::|...| |::.  ||:.|:|..:..:...::
Zfish   372 RKGSSGNTSEVSVACLTERIHQMEENQ--HSTSEELQATL-QELADLQQITQELNGENERLGEEK 433

  Fly  4557 IPPQLPKQLPQQIPQPE-LPQQLP---NNLPRHA--------------PKLSSRSHTIQGDSGYE 4603
            :  .|...|.||..:.| ..:|:.   :.|..|.              .:|..|...:..::.:|
Zfish   434 V--LLMDSLCQQSDKLEHCGRQIEYFRSLLDEHGVAYSVDEDIKSGRYMELEQRYVELAENARFE 496

  Fly  4604 NRPLQNRVMSQQTLNSSIITSNNHTTVQK-----QQKEQHINEL------RRKSLGNVLES---- 4653
            ...|..  :.|...|:..:...::...|.     :::..|:..|      .|.|:..|||.    
Zfish   497 REQLLG--VQQHLSNTLKMAEQDNAEAQNVIAALKERNHHMERLLDVERQERASMAAVLEECKAA 559

  Fly  4654 --------SQRSTYFEQE-------YKSSAPPDTPDIVK----SSLPKEDAPL-LKKFGPPQRHH 4698
                    |:.....|||       |......|..||.:    ..|.||:|.. ..|......|.
Zfish   560 VNNDQAELSRCRVLLEQERQKVAELYSIHNAGDKSDIHQLLEGVRLDKEEAEAKASKLQDDLGHA 624

  Fly  4699 YMPNSYQSPQLNK----QGNSNSTTTSSTSVRSTTVVQQQHHQQQHQ----QIKPSIVETPATPQ 4755
            ....:.....|||    ..:..|......:.:...:.:|:...|:.:    .:|.:|.|.     
Zfish   625 RSEVACLQDTLNKLDAEYRDFQSVVQKELAEQKRAIEKQREDLQEKETEIGDMKETIFEL----- 684

  Fly  4756 PQVPPEDEIPH--------NIVFNNVSAFTSMSRRNHEEDSHQGTQSGSRVNRLSKCDS--WNQI 4810
                 |||:..        |::.:::    ..|.:..::..|...:....::|..:.:|  |.|.
Zfish   685 -----EDEVEQHRAVKLHDNLIISDL----ENSMKKLQDQKHDMEREIKILHRRLREESAEWRQF 740

  Fly  4811 CQLQQTAG--PSPAKYNQPGSPGELRR---------TKSGHSLAVPKLYEAGIDKAQV----SEK 4860
            ....|||.  .:..|.......|:|||         .|.|..:...|..:...::.:|    :..
Zfish   741 QADLQTAVVIANDIKSEAQEEIGDLRRRLQEAQEKNEKLGKEIEEVKNRKQDEERGRVYNYMNAV 805

  Fly  4861 QRTVAAYFSG-----------QKSPTGGQVEELRTSMTTTTSSRKSAINRTKTSEKLSAAARKSL 4914
            :|.:||...|           :.|||   |:.|..|.  .::|:....|.|..:...:|||..:.
Zfish   806 ERDLAALRQGMGLSRRPSTSSEPSPT---VKTLIKSF--DSASQGPGANATAVAAAAAAAAAAAA 865

  Fly  4915 SSLTTT-----------SNGNVST---AGLGMVVRGGGVGGIGGGAALSRSATMPHIANLNLLDE 4965
            .::|:|           |...:.|   |.:..:.|....|.:.....||           :|.|:
Zfish   866 VTVTSTTPTAPLPRTPLSPSPMKTPPAAAVSPIQRHSITGSMAAAKPLS-----------SLADK 919

  Fly  4966 ----SNVEDAFEQLMMAQHKSSSSSEQRTETKSKDGGATVTTTTTKVTTRTVS---GSAASKNIS 5023
                :::....|.|:.|.:...:|:.||..........||:..:::...|.:|   |..||..||
Zfish   920 RPSYTDISMPAEHLLRAANSRPASALQRVSNMDTSKTITVSRRSSEEPKRDISTPDGGPASSLIS 984

  Fly  5024 PLAKFKQLDKQAAAQQAQKSSPTTSTPTTPGGSAQPLFKFTDPALNARA----ATVKDQLLQWCK 5084
                     ..:||..:..||||.|...|.....:...|  || |:|.|    .:.::.||:||:
Zfish   985 ---------MSSAAALSSSSSPTASVNPTARSRLREERK--DP-LSALAREYGGSKRNALLRWCQ 1037

  Fly  5085 HKTQEYENVQINNFSSSWSDGLAFCALIHHFLPDAFDYTTLTKQTRRHNFELAFSVADEKAGIAP 5149
            .||:.|:|:.|.||||||:|||||||::|.:||....|..|..|.:|.||.|||..| |..||..
Zfish  1038 KKTEGYQNIDITNFSSSWNDGLAFCAVLHTYLPAHIPYQELNSQDKRRNFTLAFQAA-ESVGIKS 1101

  Fly  5150 LLDVEDMVEMSRPDWKCVFVYVQSIYRRF 5178
            .||:.|||...||||:.|..||.|||:.|
Zfish  1102 TLDINDMVHTERPDWQSVMTYVTSIYKYF 1130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34417NP_001259282.1 PHA03247 <566..1191 CDD:223021
PTZ00449 <1035..1421 CDD:185628
PTZ00449 <1394..1702 CDD:185628
PTZ00121 <2080..2248 CDD:173412
Smoothelin 2594..2636 CDD:463614
Smoothelin 3127..3176 CDD:463614
Smc <3810..>3916 CDD:440809
PHA03247 <4126..4601 CDD:223021 37/191 (19%)
CH_SMTN-like 5074..5179 CDD:409049 54/105 (51%)
specc1laNP_001034905.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..166
MSCRAMM_ClfA 20..>165 CDD:468110
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 301..381 16/73 (22%)
PRK03918 <381..>816 CDD:235175 81/455 (18%)
DUF5585 821..>960 CDD:465521 30/154 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 869..895 5/25 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 939..1016 21/87 (24%)
CH_CYTS 1020..1131 CDD:409048 55/112 (49%)
Blue background indicates that the domain is not in the aligned region.

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