DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34417 and smtnl1

DIOPT Version :9

Sequence 1:NP_001259282.1 Gene:CG34417 / 31591 FlyBaseID:FBgn0085446 Length:5182 Species:Drosophila melanogaster
Sequence 2:XP_005157270.1 Gene:smtnl1 / 503743 ZFINID:ZDB-GENE-050306-23 Length:406 Species:Danio rerio


Alignment Length:349 Identity:106/349 - (30%)
Similarity:150/349 - (42%) Gaps:58/349 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly  4853 DKAQVSEKQ-RTVAAYFSGQKSPTGG---------QVEELRTSMTTTTSSRKSAINRTKTSEKLS 4907
            :|..::|:: :...:.......|.||         :.||...:.|.....:......|.|.|:  
Zfish    12 EKEVINEQESKHTESQEPADSEPRGGANKDNKENQEKEEAPANDTEACEQKGGVPENTNTVEE-- 74

  Fly  4908 AAARKSLSSLTTTSNGNVSTAGLGMVVRGGGVGGIGGGAALSRSATMPHIANLNLLDESNVEDAF 4972
                |....:|....|:|.........:.|.:...|     ..|:..|.....|..|:   |..|
Zfish    75 ----KEKQEITKNQTGDVEKETELNDNKEGEIKEEG-----KESSNDPPENENNSCDK---EGQF 127

  Fly  4973 EQLMMAQHKSSSSSEQRTETK--SKDGGATVTTTTTKVTTRTVSGSAASKNISPLAKFKQLDKQA 5035
            |:  ..:.|.:..:|.:||.|  .||             |:..|.....|..:|  ..|.....:
Zfish   128 EE--KQEEKRTKETECKTEKKEDEKD-------------TKQSSDEVKKKTENP--GRKNAAASS 175

  Fly  5036 AAQQAQKSSPTTSTPTTPGGSAQPLFKF----TDPALN----------ARAATVKDQLLQWCKHK 5086
            :|.:|...|..:|....|......:.||    |....|          |..|::|.::|.|||.|
Zfish   176 SALRASTKSSVSSRSARPSARRDAMAKFQKEETPGVRNFKVQRTSVGIAGGASIKQRILNWCKSK 240

  Fly  5087 TQEYENVQINNFSSSWSDGLAFCALIHHFLPDAFDYTTLTKQTRRHNFELAFSVADEKAGIAPLL 5151
            ||:||.|.|:|||||||||||||||:|.|.|.|||::||....|..||.||||.|:..|...|||
Zfish   241 TQKYEGVSIDNFSSSWSDGLAFCALVHRFFPSAFDFSTLKASEREKNFTLAFSTAETLADCCPLL 305

  Fly  5152 DVEDMVEMSR-PDWKCVFVYVQSI 5174
            :|.||:.|.: ||..|||.|||::
Zfish   306 EVSDMLLMGKNPDPLCVFTYVQAL 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34417NP_001259282.1 Smoothelin 2594..2636 CDD:289290
Smoothelin 3127..3176 CDD:289290
GBP_C <3810..3882 CDD:303769
coiled coil 3857..3868 CDD:293879
CH 5076..5179 CDD:237981 59/100 (59%)
smtnl1XP_005157270.1 CH 233..329 CDD:214479 58/95 (61%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4678
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001328
OrthoInspector 1 1.000 - - otm25181
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.810

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