DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34417 and Actn3

DIOPT Version :10

Sequence 1:NP_001259282.1 Gene:CG34417 / 31591 FlyBaseID:FBgn0085446 Length:5182 Species:Drosophila melanogaster
Sequence 2:NP_524801.1 Gene:Actn3 / 44964 FlyBaseID:FBgn0015008 Length:553 Species:Drosophila melanogaster


Alignment Length:521 Identity:97/521 - (18%)
Similarity:178/521 - (34%) Gaps:140/521 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  4716 NSTTTSSTSVRSTTVVQ------QQHHQQQHQQIKPSIVETPATPQPQVPPEDEIPHNIVFNNVS 4774
            :|.||:.|.|:.:.:.:      ...::::.|::                  :.:.||::.....
  Fly   100 SSCTTTETLVKESPICELNKLRLMLKNEKKKQEL------------------EIMGHNLIIMKEK 146

  Fly  4775 AFTSMSRRNHEEDSHQGTQSGSRVNRLSKC---------DSWNQICQLQQTAGPSPAKYNQPGSP 4830
            .....:|:|.....::..:...|:..|.:|         :...|..:|::.:.....:.||    
  Fly   147 TLVLQARKNQRAAENRLAEKQDRIKALEECLANCKFQLKNVNEQYQKLKKASNQLIRESNQ---- 207

  Fly  4831 GELRRTKSGHSLAVPKLYEAGIDKAQVSEKQRTVAAYFSGQKSPTGGQVE-ELRTSMTTTTSSRK 4894
              :|..||...|       .|..|.::|.:...|      .||....|.| |....:....|..|
  Fly   208 --IRPQKSWSVL-------VGRRKGRISTRTSFV------WKSLKLDQSERETLMGLKKRLSEEK 257

  Fly  4895 SAINRTKTSEKLSAAARKSLSSLTTTSNGNVSTAGLGMVVRGGGVGGIGGGAALSRSATMPHIAN 4959
            ....|.||.   .:..||::..|..                  |.|.:..|              
  Fly   258 EIKLRAKTE---MSKIRKAMDELCL------------------GKGELQFG-------------- 287

  Fly  4960 LNLLDESNVEDAFEQLMMAQHKSSSSSEQRTETKSKD-------------GGATV--------TT 5003
               |...:..||.:..::...|:.|:..|....|..|             |..|.        .:
  Fly   288 ---LQNKSETDASKDTLVVIDKALSALSQYNTLKFPDCNFQLSRLMKSLYGSLTTIRDRWIRKIS 349

  Fly  5004 TTTKVTTRTVSGSAASKNISPLAKFKQLDK-----QAAAQQAQKSSPTTS-TPTTPGGSAQPLFK 5062
            :..:.|...:..:..|....||......|.     .....|:....|.|| .|..|....:.|..
  Fly   350 SAVEPTPSCLKSNTPSLPEPPLTVSFSTDLFWDKIYKPCTQSNPVMPNTSLIPVLPKKQPKSLQL 414

  Fly  5063 FTDPALNARAA---------------TVKDQ---LLQWCKHKTQEYENVQINNFSSSWSDGLAFC 5109
            ..:|::..:.|               |..|:   ||:||:.:.:.| .:.:..||:||..|.|.|
  Fly   415 TCEPSVQYKVASRSSTTAPVPKYLGKTFGDRRLSLLRWCQERVKPY-GIPMYEFSASWISGRALC 478

  Fly  5110 ALIHHFLPDAFDYTTLTKQTRRHNFELAFSVADEKA-GIAPLLDVEDMVEMSRPDWKCVFVYVQS 5173
            |:||.:|||..|.|.|.|  ::....||:.:...|: |::..:|:...:...||:.:.:..:|:.
  Fly   479 AIIHSYLPDLIDKTYLAK--KKPEEVLAYGIKVAKSIGVSDSVDLIRELRQGRPNLEKIVDFVEE 541

  Fly  5174 I 5174
            :
  Fly   542 L 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34417NP_001259282.1 PHA03247 <566..1191 CDD:223021
PTZ00449 <1035..1421 CDD:185628
PTZ00449 <1394..1702 CDD:185628
PTZ00121 <2080..2248 CDD:173412
Smoothelin 2594..2636 CDD:463614
Smoothelin 3127..3176 CDD:463614
Smc <3810..>3916 CDD:440809
PHA03247 <4126..4601 CDD:223021
CH_SMTN-like 5074..5179 CDD:409049 32/105 (30%)
Actn3NP_524801.1 SMC_N <13..277 CDD:481474 37/216 (17%)
CH_SF 443..540 CDD:469584 30/99 (30%)
Blue background indicates that the domain is not in the aligned region.

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