DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34417 and Smtnl1

DIOPT Version :10

Sequence 1:NP_001259282.1 Gene:CG34417 / 31591 FlyBaseID:FBgn0085446 Length:5182 Species:Drosophila melanogaster
Sequence 2:NP_001178668.1 Gene:Smtnl1 / 311167 RGDID:1311701 Length:470 Species:Rattus norvegicus


Alignment Length:508 Identity:138/508 - (27%)
Similarity:206/508 - (40%) Gaps:98/508 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly  4712 QGN--SNSTTTSSTSVRSTTVVQQQHHQQQHQQIKPSIVE-TPATPQPQVPPEDEIPHNIVFNNV 4773
            :||  .:.||.|.|:....|...|...::..:.....:.| |..|...:.|| |...|       
  Rat     5 EGNPSEDGTTVSPTAGNLATPGSQGTAEEVAEGTAEEVAEGTVGTNDKEEPP-DGAEH------- 61

  Fly  4774 SAFTSMSRRNHEEDSHQGTQSGSRVNRLSKCDSWNQICQLQQTAGPSPAKYNQPGSPGELRRTKS 4838
                 :.:...|.....|.|..:.:....|.||..      :..|...||.:.....|....|..
  Rat    62 -----LCKAASEGGISGGCQVEASILEELKTDSQG------EARGKEEAKADLAEEKGGKEDTTV 115

  Fly  4839 GHSLAVPKLYEAGIDKAQVSEKQRTVAAYFSGQKSPTGGQVEELRTSMTTTTSSRKSAIN-RTKT 4902
            .......|..|...:.::|:||:..|.. ...||      |:|..|::   .|..||.:| :.:.
  Rat   116 SSQEDTGKKEETKPEPSEVTEKEEAVLP-LEKQK------VDEKETNL---ESKEKSDVNDKAEP 170

  Fly  4903 SEKLSAAARKSLSSLTTTSNGNVSTAGLGMVVRGGGVGGIGGGAALSRSATMPHIANLNLLDESN 4967
            ..|..|.|..::....|.|......                      :....|   .|..:|...
  Rat   171 ESKEDAGAEVTVKEAETESQKKADV----------------------KDQAEP---QLQEVDGKE 210

  Fly  4968 VEDAFEQLMMAQHKSSSSSEQRTETKSKDGGATVTTT--------TTKVTT---------RTVSG 5015
            .....::|:.....:....||..|.:|::..|.:.::        |.:.|:         .|.||
  Rat   211 ARSDTKELVEPGSPTEEQEEQGKENESEERAAVIPSSPEDWPESPTDEGTSLSPDGLGPESTASG 275

  Fly  5016 --SAASKNISPLAKFKQLDKQAAAQQAQKSSP--TTSTPTTP---------------GGSAQ--- 5058
              ||::...||....:...:...:::.::.:|  ..|.||.|               ||:|.   
  Rat   276 ETSASASESSPSEVPESPTEPLPSEKKKERAPERRVSAPTRPRGPRAQNRKAIMDKFGGAASGPT 340

  Fly  5059 PLFKFTDPALNARAATVKDQLLQWCKHKTQEYENVQINNFSSSWSDGLAFCALIHHFLPDAFDYT 5123
            .||:.| .|..|....||:.||:||:..|:.||:|.|.|||||||.|:|||||||.|.||||||.
  Rat   341 ALFRNT-KAAGAAIGGVKNMLLEWCRAMTRNYEHVDIQNFSSSWSSGMAFCALIHKFFPDAFDYA 404

  Fly  5124 TLTKQTRRHNFELAFSVADEKAGIAPLLDVEDMVEMSRPDWKCVFVYVQSIYR 5176
            .|....|||||.||||.|::.|..|.||:|:|||.::.||.|||:.|:|.:||
  Rat   405 ELDPTKRRHNFTLAFSTAEKLADCAQLLEVDDMVRLAVPDSKCVYTYIQELYR 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34417NP_001259282.1 PHA03247 <566..1191 CDD:223021
PTZ00449 <1035..1421 CDD:185628
PTZ00449 <1394..1702 CDD:185628
PTZ00121 <2080..2248 CDD:173412
Smoothelin 2594..2636 CDD:463614
Smoothelin 3127..3176 CDD:463614
Smc <3810..>3916 CDD:440809
PHA03247 <4126..4601 CDD:223021
CH_SMTN-like 5074..5179 CDD:409049 61/103 (59%)
Smtnl1NP_001178668.1 2A1904 <36..305 CDD:273344 56/322 (17%)
CH_SMTNL1 355..470 CDD:409109 61/103 (59%)
Blue background indicates that the domain is not in the aligned region.

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