DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34417 and Smtn

DIOPT Version :9

Sequence 1:NP_001259282.1 Gene:CG34417 / 31591 FlyBaseID:FBgn0085446 Length:5182 Species:Drosophila melanogaster
Sequence 2:XP_008768481.1 Gene:Smtn / 289734 RGDID:1310216 Length:954 Species:Rattus norvegicus


Alignment Length:1376 Identity:304/1376 - (22%)
Similarity:453/1376 - (32%) Gaps:527/1376 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly  3863 QLQREQLQREQ----LQREQLQREQLQRDQLQLQQ---QQQAAAAVQIERQRRQELERQLRLEQE 3920
            :|||::|:||:    .:|.:.:|:..:.:.|..||   :||||.|             :|....|
  Rat    36 ELQRQELEREEGALASKRFRAERQDNKENWLHSQQREAEQQAALA-------------RLAGRLE 87

  Fly  3921 ARFEREERTRLER---EYYEQQLQRQQVERQQQLDRQRQQQEQMERQRRQEMELRLQQQREQAAQ 3982
            :..:.||.|.|.|   ||.|::|.|..:                .|.|.||:|         ||.
  Rat    88 SMNDVEELTTLLRSAGEYEERKLIRAAI----------------RRVRAQEIE---------AAT 127

  Fly  3983 VNNFI--HAPQSVFRPIENETQPQPGIYKPIAHKSQPNPAVWKPPTQQSQPPQQSQQHLQPRSAT 4045
            :...:  ..|.|..|   .:::.|      .||...|.    |.|.::.|..|...:...|    
  Rat   128 LAGRLCSRLPSSGSR---EDSRRQ------AAHTLDPG----KVPEEEKQGQQTEVREPTP---- 175

  Fly  4046 TYSNTPSPSSTATSPIGLPWVAKPKVDNSDFRRKAHHFEERSLRDNIEQQQQPTYPNGNNGYLQR 4110
            |..:|....:|.|..:..|                                    |.|.      
  Rat   176 TPEDTSQDVTTVTLLLRAP------------------------------------PGGT------ 198

  Fly  4111 HNSLRSKAPALSEFKKRPSLPNAMD--PGTAAPPRQVYQAPPPPTNISFTYADFPPVRRPQGASA 4173
                             ||.|.:.|  |.||:|                     .|:..|.||..
  Rat   199 -----------------PSSPASPDSSPTTASP---------------------EPLLEPAGAQC 225

  Fly  4174 HNYRSQPCLTSAVDQVEALTNPLGAPLVLTSSNPTYLPPPGSRRFDYISSPV--------DVDAD 4230
                  |...:.|.. |.|.:|..||    |..|...|.|.|.:...||.|:        .||:.
  Rat   226 ------PAAEAPVSS-EPLPHPSEAP----SPEPPMSPAPPSSQGRVISKPLLGSTEPSDTVDST 279

  Fly  4231 -SPPNSPTSFMTMPNPTLMTDNTDDDLDLDSDNNMLEYRAETKVMRKPRSQTAVRVADRRNAHMS 4294
             ...|:..:.:..|.|      ....|.:.|.....:.:..|.:....:.:.|..|.||.....|
  Rat   280 RGSSNTKRADLAEPKP------CQRSLSVLSPRQPTQNQEPTPLAGSSQFRRAGSVRDRVRKFTS 338

  Fly  4295 DDEVYGKNSRAAKSLLYTMKQLGGGPGNASVGNSGQRRQPLTAPSSPKSGCLSPDGRPYQAPLVE 4359
            |..|              :.:|..||             |.||.:||                  
  Rat   339 DSPV--------------VARLQDGP-------------PRTALASP------------------ 358

  Fly  4360 PLFPQLSTFEPKRQPQFANSPMSTPPAVSMPSINYQANPTYTPPRSNQNSNSYLGETNTSYVVTY 4424
                     .|.|.|  ..|.|||..|.|..|             ||.:|.|             
  Rat   359 ---------TPTRLP--GPSLMSTTLASSSSS-------------SNSSSPS------------- 386

  Fly  4425 PLDDSGDEPEPESMATSVSQRLRRTSEHSNASSSLSLGSTSWTANPVHNTVPSVPLDSAMGPPVD 4489
            |.|.|..:.:.| :|.|::|......|......||:..|                |::..|.|..
  Rat   387 PSDTSSHKKQRE-LAHSLAQLQSCPQEEGPGGRSLAPRS----------------LENRAGGPRP 434

  Fly  4490 RSTKPQVSQP--VGPKMPQHVAQKQIPQQLPNQLPQQIPQQLPKQLPQQIPQQLPQQLPQQLPKQ 4552
            .|.:|....|  ||...|....:.....::.:...|....::                       
  Rat   435 CSEEPSTPPPVAVGTGEPGGSMKTTFTIEIKDGRGQASTGRV----------------------- 476

  Fly  4553 LPQQIPPQLPKQLPQQIPQPELPQQLPNNLPRHAPKLSSRSHTIQGDSGYENRPLQNRVMSQQTL 4617
                       .||....:.||...|     |..|.|.|.|      ||.:|             
  Rat   477 -----------VLPTGNQRAELTLGL-----RAPPTLLSTS------SGGKN------------- 506

  Fly  4618 NSSIITSNNHTTVQKQQKEQHINELRRKSLGNVLESSQRSTYFEQEYKSSAPPDTPDIVKSSLPK 4682
              :|...::..||.:.....|:......|.||      |...   .:|::               
  Rat   507 --TITHVSSPGTVTRLGSVTHVTTFSHASPGN------RGGC---NFKAA--------------- 545

  Fly  4683 EDAPLLKKFGPPQRHHYMPNSYQSPQLNKQGNSNSTTTSSTSVRSTTVVQQQHHQQQHQQIKPSI 4747
            |||      |.|..|   |.::.:.:.:..|.|.|:                           |:
  Rat   546 EDA------GTPVAH---PPAFSTRRSSSAGPSRSS---------------------------SL 574

  Fly  4748 VETPATPQPQVPPEDEIPHNIVFNNVSAFTSMSRRNHEEDSHQGT-QSGSRVNRLSKCDSWNQIC 4811
            :|    |.|..||...:                      ::..|| |:..:||:           
  Rat   575 ME----PDPAEPPSATV----------------------EAANGTEQTLDKVNK----------- 602

  Fly  4812 QLQQTAGPSPAKYNQPGSPGELRRTKSGHSLAVPK--LYEAGIDKAQVSEKQRTVAAYFSGQKSP 4874
                  ||   :...|.|..||        :|:..  :.:..:|:|...|:::.:.|.....:..
  Rat   603 ------GP---EGRSPLSAEEL--------MAIEDEGILDKMLDQATNFEERKLIRAALRELRQR 650

  Fly  4875 TGGQVEE-----LRTSMTTTTSSRKS-AINRTKTSEKLSAAARKSLSSLTTT-----SNGNVSTA 4928
            ...|.::     ||.:......||.: |...|.|.....||...::|::|.|     ||....||
  Rat   651 KRDQRDKERERRLREARARPGESRSNMATTETTTRHSQRAADGSAVSTVTKTERLVHSNDGTQTA 715

  Fly  4929 GLGMVVRGGGVGGIGGGAALSRSATMPHIANLNLLDESNVEDAFEQLMMAQHKSSSSSEQRTETK 4993
                                 |:.|              ||.:|  :..:::.|||||....:||
  Rat   716 ---------------------RTTT--------------VESSF--VRRSENGSSSSSSTTVQTK 743

  Fly  4994 SKDGGATVTTTTTKVTTRTVSGSAASKNISPLAKFKQLDKQAAAQQAQKSSPTTS---------- 5048
            :....::.:.....:..|....|:.|.:::.|.| :|.:|:....:|| |.|.||          
  Rat   744 TFSSSSSSSKKMGSIFDREDQTSSRSGSLAALEK-RQAEKKKELMKAQ-SLPKTSASQARKAMIE 806

  Fly  5049 ---------TPTTPGGSAQPLFKFTDPALNARAATVKDQLLQWCKHKTQEYENVQINNFSSSWSD 5104
                     :|.||..:.|....|..|..|    ::|..||.||:.||:.||:|.|.||||||||
  Rat   807 KLEKEGSSGSPGTPRTAVQRSTSFGVPNAN----SIKQMLLDWCRAKTRGYEHVDIQNFSSSWSD 867

  Fly  5105 GLAFCALIHHFLPDAFDYTTLTKQTRRHNFELAFSVADEKAGIAPLLDVEDMVEM-SRPDWKCVF 5168
            |:|||||:|:|.|:||||..|:.|.||.|||:|||.|:......||::||||:.| .:||.||||
  Rat   868 GMAFCALVHNFFPEAFDYGQLSPQNRRQNFEMAFSSAEMLVDCVPLVEVEDMMIMGKKPDPKCVF 932

  Fly  5169 VYVQSIYRRFR 5179
            .||||:|...|
  Rat   933 TYVQSLYNHLR 943

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34417NP_001259282.1 Smoothelin 2594..2636 CDD:289290
Smoothelin 3127..3176 CDD:289290
GBP_C <3810..3882 CDD:303769 7/22 (32%)
coiled coil 3857..3868 CDD:293879 3/4 (75%)
CH 5076..5179 CDD:237981 61/103 (59%)
SmtnXP_008768481.1 Smoothelin 1..41 CDD:289290 3/4 (75%)
Smoothelin 73..122 CDD:289290 19/77 (25%)
Smoothelin 602..651 CDD:289290 11/76 (14%)
CH 839..943 CDD:237981 61/103 (59%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 141 1.000 Domainoid score I4593
eggNOG 1 0.900 - - E2759_KOG4678
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001328
OrthoInspector 1 1.000 - - otm45358
orthoMCL 1 0.900 - - OOG6_107654
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.710

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