DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34417 and specc1

DIOPT Version :9

Sequence 1:NP_001259282.1 Gene:CG34417 / 31591 FlyBaseID:FBgn0085446 Length:5182 Species:Drosophila melanogaster
Sequence 2:XP_017946933.1 Gene:specc1 / 100380013 XenbaseID:XB-GENE-956924 Length:1057 Species:Xenopus tropicalis


Alignment Length:1188 Identity:237/1188 - (19%)
Similarity:392/1188 - (32%) Gaps:369/1188 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  4167 RPQGASAHNYRSQPCLTSAVDQVEALTNPLGAPLVLTSSN------------------PTYLPPP 4213
            :|.|:|          ||...:::. |...||...||.|.                  |..|..|
 Frog    61 KPGGSS----------TSTTSRMKK-TITTGAISELTESKYRSATGTSAAARRTGIPAPRELSTP 114

  Fly  4214 GSRRFDYISSPVDVDA------DSPPNSPTSFMTMPNPTLMTDNTDD----DLDLD--------- 4259
            .||....:.|||:.:|      .|.|::||....:..||......:.    .|::.         
 Frog   115 VSRDRVALRSPVNANAKKTLPSPSSPSTPTPSKNVRTPTRPKQENEQINKTVLEIQVKELLAEAK 179

  Fly  4260 -SDNNMLEYRAETKVMRKPRSQT---------AVRVADRRNAHMSDDE----------------- 4297
             .|:.:.:.|:|.:..:...|.:         ...:.|..|..:||.|                 
 Frog   180 TKDSEICKLRSELQKCKDKESPSPEVLNSIGPLAELHDINNVALSDPEALIRTLQEKNTNSLLEL 244

  Fly  4298 -VYGKNSRAAKSLLYTMKQLGGGPGNASVGNSGQRRQPLTAPS-----------SPKSG----CL 4346
             :..|.:...|..|:.::|   .|.:.::.::|.....|.:||           ||.:|    |.
 Frog   245 AILRKENADLKQKLHALEQ---SPLSDTITSNGTDSSSLLSPSTQGTNIGCQLKSPPAGETGDCR 306

  Fly  4347 SP--------DGRPYQAPLVEPLFPQLSTFEPKRQPQFANSPMSTPPAVSMPSINYQANPTYT-- 4401
            .|        .|..........:.|..|.||               ....|||     .||.|  
 Frog   307 IPGSESGLHISGSSSSDVTKASISPDASDFE---------------HIADMPS-----RPTSTGS 351

  Fly  4402 -PPRSNQNSNSYLGETNTSYVVTYPLDDSGDEPEPESMATSVSQRLRRTSEHSNASSSLSLGSTS 4465
             |.:.::.|.|.....|.|                :....|:::|:.:..|:.::          
 Frog   352 IPCQGSKCSTSGSSPNNIS----------------DLSVASLTERIHKMEENHHS---------- 390

  Fly  4466 WTANPVHNTVPSVPLDSAMGPPVDRSTKPQVSQPVGPKMPQHVAQKQIPQQLPNQLPQQIPQQ-- 4528
             ||..:..|:..:.         |::...|.......|:.:..|..:...|...|..:|:.|:  
 Frog   391 -TAEELQATLQELS---------DQNLMVQELTMESEKLVEEKAFLETNLQQQRQRAEQLSQENE 445

  Fly  4529 ----LPKQLPQQIPQQLPQQLPQ------------QLPKQLPQQIPPQLPKQLPQQIPQPELPQQ 4577
                |.|...:....::..:|.:            |..::....|..||...|.....:.:..|.
 Frog   446 RLMGLLKDRAKTEEAEIHGKLTETEKKYLELVEKSQFEREKLLNIQQQLTSSLRSLEKEHQEAQA 510

  Fly  4578 LPNNLPRHAPKLSSRSHTIQGDSGYENRPLQNRVMSQQTLNSSIITSNNHTTVQKQQKEQHINEL 4642
            :...|.....||.....|.:.:.....:.|::    |:..|..:...||....|.:.:.|...|:
 Frog   511 MRKKLEEEVDKLQRLLDTQRKEKNVTAKALED----QKVTNEGLKIENNCLKAQLEGERQKAAEI 571

  Fly  4643 RRKSLGNVLESSQRSTYFEQEYKSS-APPDTPDIVKSSLPKE--------------------DAP 4686
            .....|    |...:|..::..||: |..:..::..|.|.:|                    :..
 Frog   572 TAVGKG----SGSGNTEIQEMLKSAHAEKEHLELTCSELRQELLRANSEVKQLQCLLAKVETECH 632

  Fly  4687 LLKKFGPPQRHHYMPNSYQSPQLNKQGNSNSTTTSSTSVRSTTVVQQQHHQQQHQQIKPSIVETP 4751
            .||:.|..:.     ...:|..|..|..|:...|....::. |:.:.:...:||:.:|       
 Frog   633 DLKELGDLRE-----EQLKSANLKLQERSSEKDTEIKDMKE-TIFELEDQVEQHRAVK------- 684

  Fly  4752 ATPQPQVPPEDEIPHNIVFNNVSAFTSMSRRNHEEDSHQGTQSGSR-VNRLSKCDS--WNQI--- 4810
                             :.||.......::.:..|:..|..:...: :|:..|.|:  |.:.   
 Frog   685 -----------------LHNNQLISDLENKVDKLEEQKQDLERQLKLLNKQMKEDAEEWRRFQAD 732

  Fly  4811 ------------CQLQQTAGPSPAKYNQPGSPGELRRTKSGHSLAVPKLYEAGIDKAQVSEKQRT 4863
                        |:.||                |||..|.       :|.|         |::|:
 Frog   733 LQTAVVVANDIKCESQQ----------------ELRAVKR-------RLQE---------EEERS 765

  Fly  4864 VAAY-----FSGQKSPTGGQVEELRTSMTTTTSSRKSAINRTKTSEKLSAAARKSLSSLTTTSNG 4923
            ...:     ..|.:.|: |:||.:...            ||.:........|..|.|.|..|...
 Frog   766 ACLHRELEELQGSRQPS-GEVESVDED------------NRIRWPSVAHTQAPTSSSELPATVKS 817

  Fly  4924 NVSTAGLGMVVRGGGVG--------------GI----GGGAALSRSATMPHIANLNLLDESNVED 4970
            .:.:..||   ..||||              ||    ...||:|....:...:|..|    :.::
 Frog   818 LIKSFDLG---NQGGVGQNIPVHSVPRSPLSGIPVRTAPAAAVSPIQRLSVSSNAKL----SGKE 875

  Fly  4971 AFEQLMMAQHKSSSSSE---QRTETKSKDGGATVTTTTTKVTTRTVSGSAASKNISPLAKFKQLD 5032
            |..||..|........:   .|...||....:..|.|.....:||          ||:|    ||
 Frog   876 AERQLDNADKLKGQRDDFTPDRFPRKSPSLESLNTHTALGFGSRT----------SPIA----LD 926

  Fly  5033 KQA--AAQQAQKSSPTTSTPTTPGGSAQPLFKFTDPALNARAATVKDQLLQWCKHKTQEYENVQI 5095
            ..:  :....::..|..:.....|||.                  ::.||:||:.||:.|.|:.|
 Frog   927 SLSHHSKISVERKDPLAALAREYGGSK------------------RNALLKWCQKKTEGYSNIDI 973

  Fly  5096 NNFSSSWSDGLAFCALIHHFLPDAFDYTTLTKQTRRHNFELAFSVADEKAGIAPLLDVEDMVEMS 5160
            .|||||||||||||||:|.:||....|..|..|.::.|..|||..| |..||...|::.:|:...
 Frog   974 TNFSSSWSDGLAFCALLHTYLPAHIPYQELNSQDKKRNLMLAFQAA-ESVGIKTSLELNEMMFTD 1037

  Fly  5161 RPDWKCVFVYVQSIYRRF 5178
            ||||:||..||..||:.|
 Frog  1038 RPDWQCVMHYVAQIYKYF 1055

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34417NP_001259282.1 Smoothelin 2594..2636 CDD:289290
Smoothelin 3127..3176 CDD:289290
GBP_C <3810..3882 CDD:303769
coiled coil 3857..3868 CDD:293879
CH 5076..5179 CDD:237981 51/103 (50%)
specc1XP_017946933.1 DUF641 <157..195 CDD:368160 4/37 (11%)
DUF4670 <380..544 CDD:374040 27/187 (14%)
SMC_prok_B 468..>780 CDD:274008 59/381 (15%)
CH 954..1057 CDD:366016 51/103 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23167
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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