DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3342 and Golga2

DIOPT Version :10

Sequence 1:NP_572324.1 Gene:CG3342 / 31586 FlyBaseID:FBgn0029874 Length:453 Species:Drosophila melanogaster
Sequence 2:XP_006234054.1 Gene:Golga2 / 64528 RGDID:620282 Length:1037 Species:Rattus norvegicus


Alignment Length:495 Identity:106/495 - (21%)
Similarity:172/495 - (34%) Gaps:141/495 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 QSYQDFFDKLRSESGPRNLRQIFEDDDRPLANESSSLRYQPGSSKKLQAGKRPAMTRSSTQETG- 70
            |..||..|:|..|.         :|..:.||.|..:||.|      ||.         ..|..| 
  Rat   212 QQNQDTLDQLEKEK---------KDYQQKLAKEQGALREQ------LQV---------HIQTIGI 252

  Fly    71 -DSPPAAWNTAIAKVVHAYR-----SSENVGRVGLALSILGEMEASKLIVYRSKSQVLTTLQLTP 129
             .|..|...||:|....|.|     |.:...|:..:...:||:|       |:.|.|.|..:...
  Rat   253 LVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELE-------RTLSTVSTQQKQAD 310

  Fly   130 RGGKVILRES---YLQFYDDEQRFWSLRFDKEPDEKEFITFMVKNKLPV--------------EH 177
            |..|.:.:|.   .|:.|.:.:....|| .:..:.:|.:..:|..|...              |.
  Rat   311 RYNKDLTKERDALKLELYKNGKSNEDLR-QQNSELEEKLRVLVAEKAAAQLGAEELQKKLEMSEL 374

  Fly   178 YLSEISSSSSASPSREDL-----SKIRTKATVTKTTPNPPQP------------------QPRSR 219
            .|.:.||.|.||.|.|.|     .:.:.::.|.:...:..|.                  |.|.:
  Rat   375 LLQQFSSQSEASGSNEQLQQAMEERAQLESHVGQLMESLKQLQVERDQYAENLKGESAMWQQRVQ 439

  Fly   220 VTLPTLEKADDEERERETETPSNEDVIV--------TPVPR-PIGSSNAHRKLSASSLAVANAST 275
            .....:....:|:.:||::....|..:.        .|.|. |.|.|.|..:|...         
  Rat   440 QMAEQVHALKEEKEQRESQVQELEASLAELRSQMEEPPPPEPPTGPSEAEERLQGE--------- 495

  Fly   276 SSDTPLAVTTLDKYLDEQRASGALMEHKMD-AILQAMNRMGGQSSVAPKKPSDPLLERDSEDEML 339
                   |..|.|.|  :..:|.|.....| ..|..:||                          
  Rat   496 -------VEQLQKEL--EGLTGQLRAQVQDNESLSHLNR-------------------------- 525

  Fly   340 ELEQKLLNLKRENRALMRNLKAREQALEDLRCSACALCEELLVQNGELKSQNAQL-----LLASQ 399
            |.|.:||.|:||.:......:.|:|.||.::.....: ...|.||.|||.|.|:|     .|.::
  Rat   526 EQEGRLLELEREAQHWSEQAEERKQILESMQSDRTTI-SRALSQNRELKEQLAELQNGFVRLTNE 589

  Fly   400 HISDSSTAASPAHCRNCESSSRQIAKMQLHISALQEALRI 439
            ::..:|...|..|.:  :..:|::.::|..:..|:|.:.:
  Rat   590 NMEITSALQSEQHVK--KELARKLGELQERLGELKETVEL 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3342NP_572324.1 None
Golga2XP_006234054.1 SMC_prok_B <178..472 CDD:274008 61/291 (21%)
GOLGA2L5 408..943 CDD:464485 52/267 (19%)
GM130_C 988..1033 CDD:465957
Blue background indicates that the domain is not in the aligned region.

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