DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PpV and gsp-3

DIOPT Version :9

Sequence 1:NP_001259272.1 Gene:PpV / 31582 FlyBaseID:FBgn0003139 Length:303 Species:Drosophila melanogaster
Sequence 2:NP_491429.1 Gene:gsp-3 / 172082 WormBaseID:WBGene00021113 Length:305 Species:Caenorhabditis elegans


Alignment Length:256 Identity:96/256 - (37%)
Similarity:155/256 - (60%) Gaps:1/256 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 ENELKKLCEMVCDILLEETNILPVSTPVTVCGDIHGQFYDLEQLFRTGGQVPHTNYIFMGDFVDR 83
            |.||:..|.:...:...:.::|.|..|:.||||||||:.||.::|...|..|..|::|:||:|||
 Worm    30 EQELQTCCAVAKSVFASQASLLEVEPPIIVCGDIHGQYSDLLRIFDKNGFPPDVNFLFLGDYVDR 94

  Fly    84 GYYSLETFTRLLTLKARYPSRITLLRGNHETRQITKVYGFFDECFSKYGNANGWKYCCKVFDLLT 148
            |..::||...:|..|.:||....:||||||...|.:||||::||..:|.:...|......|:.:.
 Worm    95 GRQNIETICLMLCFKIKYPENFFMLRGNHECPAINRVYGFYEECNRRYKSTRLWSIFQDTFNWMP 159

  Fly   149 IAAIIDEEVLCVHGGLSPEIITLDQIRTIDRNGEIPYKGAFCDLVWSDPED-MEYWGQSPRGAGW 212
            :..:|...:||:||||||.:.||||:|.:.|..:.|......||:|:||:. ::.|..:.||..:
 Worm   160 LCGLIGSRILCMHGGLSPHLQTLDQLRQLPRPQDPPNPSIGIDLLWADPDQWVKGWQANTRGVSY 224

  Fly   213 LFGHNVTKDFMAINNLNLICRAHQLVNEGIKYMFDGKLVTVWSAPNYCYRCGNVAAILSFE 273
            :||.:|..|..:..:::|:.||||:|.:|.::....|:||::|||:||.:..|.||.:..:
 Worm   225 VFGQDVVADVCSRLDIDLVARAHQVVQDGYEFFASKKMVTIFSAPHYCGQFDNSAATMKVD 285

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpVNP_001259272.1 PTZ00239 3..303 CDD:173488 96/256 (38%)
MPP_PP2A_PP4_PP6 3..287 CDD:277360 96/256 (38%)
gsp-3NP_491429.1 MPP_superfamily 6..297 CDD:301300 96/256 (38%)
PP2Ac 29..299 CDD:197547 96/256 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0639
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53795
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000018
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

Return to query results.
Submit another query.