DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3842 and rdh12l

DIOPT Version :9

Sequence 1:NP_001259270.1 Gene:CG3842 / 31576 FlyBaseID:FBgn0029866 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_001009912.1 Gene:rdh12l / 494176 ZFINID:ZDB-GENE-040801-48 Length:291 Species:Danio rerio


Alignment Length:289 Identity:148/289 - (51%)
Similarity:192/289 - (66%) Gaps:4/289 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 AYRKANRIDGKVVIVTGCNTGIGKETVLELAKRGARVYMACRDPGRCEAARLDIMDRSRNQQLFN 129
            ::..|.|:|||.|::||.||||||||.::|||||||:.|||||..:.|||..::.|.|.||.:|.
Zfish     4 SWSSAARLDGKTVLITGANTGIGKETAIDLAKRGARIIMACRDMEKAEAALKEVKDSSGNQDVFI 68

  Fly   130 RTLDLGSLQSVRNFVERFKAEESRLDILINNAGVMACPRTLTADGFEQQFGVNHLGHFLLTNLLL 194
            .:|||...:|:|.|.|:...||.:::|||||||||.||...||||||.|.||||:||||||.|||
Zfish    69 SSLDLSDSKSIRGFAEKINKEEKQVNILINNAGVMVCPYGKTADGFEMQIGVNHMGHFLLTYLLL 133

  Fly   195 DRLKHSSPSRIVVVSSAAHLFGRINREDLMSEKNYSKFFGAYSQSKLANILFTLKLSTILKDTGV 259
            |.:|.|:|:||:.|||.||.:|.||.||:.|||||.| ..||.||||||:|||..|:..|:.|||
Zfish   134 DLIKRSAPARIINVSSTAHQWGTINLEDINSEKNYDK-QKAYCQSKLANVLFTRSLAKRLEGTGV 197

  Fly   260 TVNCCHPGVVRTEINRHFSGPGWMKTALQKGSLYFFKTPKAGAQTQLRLALDPQLEGSTGGYYSD 324
            |....|||||:|::.||.|.|   :.|:...:..|.||...||||.:..|:||.|:..:|.||||
Zfish   198 TAYSLHPGVVQTDLWRHLSKP---QQAVMWFTKPFTKTSVQGAQTSIYCAVDPALQTESGKYYSD 259

  Fly   325 CMRWPLFPWVRNMQTADWLWRESEKLLGL 353
            |..........:.:.|..||..|.::|.:
Zfish   260 CAPAKAAKAAMDDEVAQRLWELSCRMLNI 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3842NP_001259270.1 FabG 71..319 CDD:223959 136/247 (55%)
NADB_Rossmann 74..347 CDD:304358 143/272 (53%)
rdh12lNP_001009912.1 PRK06197 5..291 CDD:235737 148/288 (51%)
NADB_Rossmann 13..282 CDD:304358 143/272 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1208
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53570
OrthoDB 1 1.010 - - D414554at33208
OrthoFinder 1 1.000 - - FOG0000061
OrthoInspector 1 1.000 - - mtm6476
orthoMCL 1 0.900 - - OOG6_100091
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X72
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
109.690

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