DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3842 and rdh14a

DIOPT Version :9

Sequence 1:NP_001259270.1 Gene:CG3842 / 31576 FlyBaseID:FBgn0029866 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_001006031.1 Gene:rdh14a / 450010 ZFINID:ZDB-GENE-041010-124 Length:286 Species:Danio rerio


Alignment Length:282 Identity:148/282 - (52%)
Similarity:185/282 - (65%) Gaps:3/282 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 GKVVIVTGCNTGIGKETVLELAKRGARVYMACRDPGRCEAARLDIMDRSRNQQ--LFNRTLDLGS 136
            ||.|||||.|:||||.|..||.:|.|||.|||||..|.|.|..:|...:..:|  |..:.|||.|
Zfish     4 GKTVIVTGANSGIGKATTTELLRRQARVIMACRDRERAEKAAQEIKQEAGPEQGELVIKLLDLAS 68

  Fly   137 LQSVRNFVERFKAEESRLDILINNAGVMACPRTLTADGFEQQFGVNHLGHFLLTNLLLDRLKHSS 201
            |:|||.|.|....||.|:||||||||:..||.|.:.||||.||.|||||||||||||||.||.|:
Zfish    69 LKSVRVFCEGIIKEEPRIDILINNAGIYQCPYTKSEDGFEMQFAVNHLGHFLLTNLLLDLLKCSA 133

  Fly   202 PSRIVVVSSAAHLFGRINREDLMSEKNYSKFFGAYSQSKLANILFTLKLSTILKDTGVTVNCCHP 266
            ||||:||||..:.:|.||.:||.||::|.|.| :|::|||||:||||:||..||:||||||...|
Zfish   134 PSRIIVVSSKLYKYGEINFDDLNSEQSYDKAF-SYARSKLANLLFTLELSHKLKETGVTVNALTP 197

  Fly   267 GVVRTEINRHFSGPGWMKTALQKGSLYFFKTPKAGAQTQLRLALDPQLEGSTGGYYSDCMRWPLF 331
            |:|||.:.||...|..:|......|..|||:|:.||||.:.||....:||..|..::||....|.
Zfish   198 GIVRTNLGRHVHIPLLVKPLFNLASRAFFKSPEEGAQTSVYLACSEDVEGVQGKCFADCKEEQLL 262

  Fly   332 PWVRNMQTADWLWRESEKLLGL 353
            ....:.:.|..||..||.::|:
Zfish   263 AKATDEEVAKKLWDISEVMVGI 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3842NP_001259270.1 FabG 71..319 CDD:223959 138/246 (56%)
NADB_Rossmann 74..347 CDD:304358 145/274 (53%)
rdh14aNP_001006031.1 PRK06197 4..285 CDD:235737 148/282 (52%)
NADB_Rossmann 4..278 CDD:304358 145/274 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1208
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53570
OrthoDB 1 1.010 - - D414554at33208
OrthoFinder 1 1.000 - - FOG0000061
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100091
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1905
SonicParanoid 1 1.000 - - X72
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.760

Return to query results.
Submit another query.