DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3842 and rdh12

DIOPT Version :9

Sequence 1:NP_001259270.1 Gene:CG3842 / 31576 FlyBaseID:FBgn0029866 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_001002325.1 Gene:rdh12 / 436597 ZFINID:ZDB-GENE-040718-9 Length:319 Species:Danio rerio


Alignment Length:318 Identity:154/318 - (48%)
Similarity:199/318 - (62%) Gaps:9/318 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 AWAVLIFLIVLGILLFMWLLRKCIQGPAYRKANRIDGKVVIVTGCNTGIGKETVLELAKRGARVY 102
            |:|..:.|:.|.:.|....:||...|.:.|...|:||||.:|||.|:||||||.|:||.|||||.
Zfish     6 AFAAGLGLVALILRLLSPQIRKYAAGGSCRSTVRLDGKVALVTGANSGIGKETALDLASRGARVI 70

  Fly   103 MACRDPGRCEAARLDIMDRSRNQQLFNRTLDLGSLQSVRNFVERFKAEESRLDILINNAGVMACP 167
            :||||..:.|.|..:|..|....::..|.|||....|:|.|.:||..|...|.|||||||||.||
Zfish    71 LACRDLEKAEEAAAEIRTRVGGAKVEVRELDLADCCSIRAFAQRFLREVDHLHILINNAGVMMCP 135

  Fly   168 RTLTADGFEQQFGVNHLGHFLLTNLLLDRLKHSSPSRIVVVSSAAHLFGRINREDLMSEKNYSKF 232
            ...||||||.|.|||||||:|||.||:..||.|:|||||||||.||.||.|...||.|:.:|:..
Zfish   136 YMKTADGFEMQIGVNHLGHYLLTYLLIGLLKRSAPSRIVVVSSLAHNFGWIRFHDLHSQGSYNSG 200

  Fly   233 FGAYSQSKLANILFTLKLSTILKDTGVTVNCCHPGVVRTEINRHFSGPGWMKTALQKGSLYFFKT 297
            . ||.||||||:|||.:|:..|:.:.||||..|||.||:|:.||.:    :.:.|......|.|:
Zfish   201 L-AYCQSKLANVLFTRELARRLQGSNVTVNSVHPGTVRSELVRHST----LMSLLFAFFSMFLKS 260

  Fly   298 PKAGAQTQLRLALDPQLEGSTGGYYSDCMRWPLF--PWVRNMQTADWLWRESEKLLGL 353
            ||.||||.:..|:..:|:..:|.::|||.  |.|  |..|:.:||..||..|.:|||:
Zfish   261 PKEGAQTSIYCAVAEELQSISGKHFSDCA--PAFVAPQGRSEETARKLWDVSCELLGI 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3842NP_001259270.1 FabG 71..319 CDD:223959 129/247 (52%)
NADB_Rossmann 74..347 CDD:304358 139/274 (51%)
rdh12NP_001002325.1 PRK06197 41..318 CDD:235737 144/283 (51%)
NADB_Rossmann 42..310 CDD:304358 139/274 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1208
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53570
OrthoDB 1 1.010 - - D414554at33208
OrthoFinder 1 1.000 - - FOG0000061
OrthoInspector 1 1.000 - - mtm6476
orthoMCL 1 0.900 - - OOG6_100091
Panther 1 1.100 - - O PTHR24320
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1905
SonicParanoid 1 1.000 - - X72
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.820

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