DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3842 and Rdh13

DIOPT Version :9

Sequence 1:NP_001259270.1 Gene:CG3842 / 31576 FlyBaseID:FBgn0029866 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_001101938.1 Gene:Rdh13 / 361504 RGDID:1304959 Length:334 Species:Rattus norvegicus


Alignment Length:308 Identity:150/308 - (48%)
Similarity:187/308 - (60%) Gaps:18/308 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 LLRKCIQGPAYRKANRIDGKVVIVTGCNTGIGKETVLELAKRGARVYMACRDPGRCEAARLDIMD 120
            ||:..:.|.|......|.|:.|||||.||||||:|.|||||||..:.:||||..:||||..||..
  Rat    20 LLKDYVAGGACPSKATIPGRTVIVTGANTGIGKQTALELAKRGGNIILACRDREKCEAAAKDIRG 84

  Fly   121 RSRNQQLFNRTLDLGSLQSVRNFVERFKAEESRLDILINNAGVMACPRTLTADGFEQQFGVNHLG 185
            .:.|.::....|||.||:|:|.|..:...||.|:|||:|||.||.||...|.||||.||||||||
  Rat    85 ETLNPRVRAEHLDLASLKSIREFAGKIIKEEERVDILVNNAAVMRCPHWTTEDGFEMQFGVNHLG 149

  Fly   186 HFLLTNLLLDRLKHSSPSRIVVVSSAAHLFGRINREDLMSE-KNYSKFFGAYSQSKLANILFTLK 249
            ||||||||||:||.|:||||:.:||.||:.|.|:.|||..: |.|.. ..||.|||||.:|||.:
  Rat   150 HFLLTNLLLDKLKASAPSRIINLSSLAHVAGHIDFEDLNWQIKKYDT-KAAYCQSKLAVVLFTKE 213

  Fly   250 LSTILKDTGVTVNCCHPGVVRTEINRH-------FSGPGWMKTALQKGSLYF--FKTPKAGAQTQ 305
            ||..|:.||||||..||||.|||:.||       |||       ...|..::  ||:|:..||..
  Rat   214 LSRRLQGTGVTVNALHPGVARTELGRHTGMHNSAFSG-------FMLGPFFWLLFKSPQLAAQPS 271

  Fly   306 LRLALDPQLEGSTGGYYSDCMRWPLFPWVRNMQTADWLWRESEKLLGL 353
            ..||:..:||..:|.|:.........|...:.:.|..||.||..|:||
  Rat   272 TYLAVAEELESVSGKYFDGLREKAPSPEAEDEEVARRLWTESAHLVGL 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3842NP_001259270.1 FabG 71..319 CDD:223959 135/257 (53%)
NADB_Rossmann 74..347 CDD:304358 140/282 (50%)
Rdh13NP_001101938.1 NADB_Rossmann 38..313 CDD:419666 140/282 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 247 1.000 Domainoid score I2082
eggNOG 1 0.900 - - E2759_KOG1208
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53570
OrthoDB 1 1.010 - - D414554at33208
OrthoFinder 1 1.000 - - FOG0000061
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100091
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X72
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.730

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