DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3842 and Rdh1

DIOPT Version :10

Sequence 1:NP_572316.1 Gene:CG3842 / 31576 FlyBaseID:FBgn0029866 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_610310.2 Gene:Rdh1 / 35708 FlyBaseID:FBgn0033205 Length:330 Species:Drosophila melanogaster


Alignment Length:333 Identity:177/333 - (53%)
Similarity:222/333 - (66%) Gaps:26/333 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 IFLIVLGILLFMW---------LLRKCIQGPAYRKANRIDGKVVIVTGCNTGIGKETVLELAKRG 98
            ||:..|...|.||         .|::.:||..:.|.....|||.||||.||||||||.||:|:||
  Fly     3 IFIDCLLSPLIMWPATIGVGIYFLKEYMQGGKFTKDTDETGKVFIVTGANTGIGKETALEIARRG 67

  Fly    99 ARVYMACRDPGRCEAARLDIMDRSRNQQLFNRTLDLGSLQSVRNFVERFKAEESRLDILINNAGV 163
            ..||:||||..|||.||.||:..:.||.:|:|.|||.||.|:|.||:.||.|:.:|.:|||||||
  Fly    68 GTVYLACRDMNRCEKARKDIIKETNNQNIFSRELDLSSLDSIRKFVDGFKKEQPKLHVLINNAGV 132

  Fly   164 MACPRTLTADGFEQQFGVNHLGHFLLTNLLLDRLKHSSPSRIVVVSSAAHLFGRINREDLMSEKN 228
            |.||:|||.||:|.|.||||:|||||||||||.||:|:|||||||||.||..|.||..||.|||:
  Fly   133 MRCPKTLTKDGYELQLGVNHIGHFLLTNLLLDVLKNSAPSRIVVVSSLAHARGSINVADLNSEKS 197

  Fly   229 YSKFFGAYSQSKLANILFTLKLSTILKDTGVTVNCCHPGVVRTEINRHFSGPGWMKTALQKGSLY 293
            |.:.. |||||||||:|||.:|:..|:.:|||||..|||||.||:.|:::   :.:|.|.|    
  Fly   198 YDEGL-AYSQSKLANVLFTRELAKRLEGSGVTVNALHPGVVDTELARNWA---FFQTNLVK---- 254

  Fly   294 FF---------KTPKAGAQTQLRLALDPQLEGSTGGYYSDCMRWPLFPWVRNMQTADWLWRESEK 349
            ||         ||||:||||.:..||||:|:..:|.|:|||...|:.....:.:.|.:||.||||
  Fly   255 FFLKPMIWPLLKTPKSGAQTSIYAALDPELKNISGLYFSDCKPKPVASGALDDKVAKFLWAESEK 319

  Fly   350 LLGLPPLE 357
            ..||..||
  Fly   320 WTGLDKLE 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3842NP_572316.1 Rossmann-fold NAD(P)(+)-binding proteins 74..347 CDD:473865 159/281 (57%)
Rdh1NP_610310.2 Rossmann-fold NAD(P)(+)-binding proteins 43..317 CDD:473865 159/281 (57%)

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