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Protein Alignment CG3842 and Cbr1

DIOPT Version :9

Sequence 1:	NP_001259270.1	Gene:	CG3842 / 31576	FlyBaseID:	FBgn0029866	Length:	406	Species:	Drosophila melanogaster
Sequence 2:	NP_062043.1	Gene:	Cbr1 / 29224	RGDID:	2286	Length:	277	Species:	Rattus norvegicus

Alignment Length:	302	Identity:	78/302 - (25%)
Similarity:	121/302 - (40%)	Gaps:	69/302 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly    73 DGKVVIVTGCNTGIGKETVLELAKRG-ARVYMACRDPGRCEAARLDIMDRSRNQQLFNRTLDLGS 136
            |..|.:|||.|.|||...|.:|.::. ..|.:..||..|...|...:.....:.:.  ..||:.:
  Rat     4 DRPVALVTGANKGIGFAIVRDLCRKFLGDVVLTARDESRGHEAVKQLQTEGLSPRF--HQLDIDN 66

  Fly   137 LQSVRNFVERFKAEESRLDILINNAGVMACPRTLTADGFEQQFGVNHLGHFLLTNLLLDRLKHSS 201
            .||:|...:....|...|::|:||||:..  :.:....|..|..|....:|..|.   |..|...
  Rat    67 PQSIRALRDFLLQEYGGLNVLVNNAGIAF--KVVDPTPFHIQAEVTMKTNFFGTQ---DVCKELL 126

  Fly   202 P-----SRIVVVSSAAHLFG---------------RINREDLMSEKNYSKFF------------- 233
            |     .|:|.|||:..|..               .|..|:|:...|  ||.
  Rat   127 PIIKPQGRVVNVSSSVSLRALKSCSPELQQKFRSETITEEELVGLMN--KFIEDAKKGVHAKEGW 189

  Fly   234 --GAYSQSKLA----NILFTLKLSTILKDTGVTVNCCHPGVVRTEINRHFSGPGWMKTALQKGSL 292
              .||..:|:.    :.::..||:...::..:.:|.|.||.|||::    :||        |.:
  Rat   190 PNSAYGVTKIGVTVLSRIYARKLNEERREDKILLNACCPGWVRTDM----AGP--------KAT- 241

  Fly   293 YFFKTPKAGAQTQLRLA-LDPQLEGSTGGYYSDCMRWPLFPW 333
               |:|:.||:|.:.|| |.|..||..|.:..|   ..:.||
  Rat   242 ---KSPEEGAETPVYLALLPPGAEGPHGQFVQD---KKVEPW 277

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.