DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12219 and pzg

DIOPT Version :10

Sequence 1:NP_572312.1 Gene:CG12219 / 31572 FlyBaseID:FBgn0043796 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_649297.1 Gene:pzg / 40351 FlyBaseID:FBgn0259785 Length:996 Species:Drosophila melanogaster


Alignment Length:737 Identity:135/737 - (18%)
Similarity:225/737 - (30%) Gaps:269/737 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 AGGASA-------PAPDDEDDG----------------KAMPESYLVQLISIH--------LYLC 55
            ||||||       .|.:|.:.|                :..|::.|..:.:.|        |...
  Fly    51 AGGASAVGGVAQQQAVNDAESGGVGIGGLATRCYICDDRCEPQTSLTDMCTTHTSTKFPNKLAQL 115

  Fly    56 LSRDDAISTC----ICTECCSQLESFHNFWKLVELKQTTLCS---QFLAIDCDV----------- 102
            :.....:..|    :|:.|.:.:..:......||..:|.|.|   :..||:.|:           
  Fly   116 VGEGFLVIVCGEDYVCSRCTNLVNYYDRLENDVERVKTNLISLLNKKYAINEDMGQEGSPPLKMQ 180

  Fly   103 -------NWSEDGSETQLDAQPQLLLE--PAEEPKVVTPTTANK--------------------- 137
                   |.|.:.|.:....:|:.||:  |..:.|:...||.:.                     
  Fly   181 KMVGGSANRSLEESPSADLLRPRKLLQGNPVGQSKIAPGTTQSSVQGTQTVQRKATKIYKCTSCD 245

  Fly   138 --------------------FPCMFCEKSFKMRRYLEEH-IATHTGDRPIACPYCEMAFRCRSNM 181
                                |.|..|.|.|.....:::| :..|.......|..|.:.|...:::
  Fly   246 YKTSDMRLFNTHYETCKQQTFQCKTCRKIFPHFGAMKQHMVRDHNTAMDNTCAMCHINFVNENSL 310

  Fly   182 YTHVKSKHTTQWLKAREERDAAKSNQNHTTPEETAPAVLVPVPAPAPALASAPASSASPGNTVNP 246
            ..|:::.|.|..|               .|...|.||...||     |.|:|.|::|:..|.|..
  Fly   311 RKHMETNHATNVL---------------VTSTTTIPASAAPV-----AAAAAAAAAAANENLVGT 355

  Fly   247 AATATPASSATPTTNLA--------AAPLPSP----------PTVQQLPLSVIKSQPS----EAM 289
            :...........|..:.        ||..|.|          .|.:...:...:.|.:    ...
  Fly   356 SLYTCNHCQFKSTDKVVFDEHMRKHAAGKPKPFKCRLCSQRFETREAATVHAKQHQTNFFKCGTC 420

  Fly   290 NLTITKTPPSGSRGSRNRSSRRKTHSPKKVQHTEGSDVSDEDSPQKRLKE--NELILANYNAVAA 352
            ::|..|..........::|....|.|||:       .||...:.||.|:|  :|.:..:..|..|
  Fly   421 SMTFPKREMLVKHFEVHQSPSASTVSPKQ-------SVSQNLNTQKLLQETIDEALSDSLPASTA 478

  Fly   353 AVV--------------------------------------------------AAASLTGNPPGQ 367
            |||                                                  ||.:|..:.||:
  Fly   479 AVVATTESENNIRFFSCSICSLTFIQETYYNHHMETHRRDKKATSAGATALNSAATALLSDEPGE 543

  Fly   368 ------PDSLQQRLCA---SLLQQQHQEQLFAVMSATAAAAAAVGTSSATTTTTTTTGT------ 417
                  .:|.:|...|   ||.::.|.::      ..:..|...|:.......|:..|:      
  Fly   544 ATGKAGDESGEQNAEADIESLFEKLHSDK------NESGEAPKPGSKGGEMVITSQEGSGGITFN 602

  Fly   418 -MMAHPYGNHPPSETDK-RPAAPLQAVIHAAPVSIICPNCGELPGQNHRCLSKPKYACDVCGKSF 480
             .:..|.|:.  |:.|. ...||:.       |||..||..:...:     |:.:.:.|..|:|.
  Fly   603 ITIPQPDGDQ--SQKDSPNTTAPVS-------VSIDMPNLDQAEDE-----SQSQGSIDAKGESG 653

  Fly   481 KMKRYLEEHFATHTGVKLHTCAFCPTEFRSKSN-------MYHHTKRKHKAEWERSRATRSAAKA 538
            :                       .:...||||       ..........||.|.|..|::|:||
  Fly   654 E-----------------------ASSADSKSNAAPVSMPSLDDDNEAAAAEAEASEETKTASKA 695

  Fly   539 GVQEQMQHTNPSQAQAQPGPAA 560
            | ||:.:......|:::...||
  Fly   696 G-QEKAKAKAGESAKSKEAAAA 716

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12219NP_572312.1 zf-AD 2..91 CDD:214871 19/103 (18%)
PHA00733 <117..189 CDD:177301 18/115 (16%)
C2H2 Zn finger 140..160 CDD:275368 5/20 (25%)
zf-H2C2_2 152..177 CDD:463886 5/25 (20%)
C2H2 Zn finger 168..186 CDD:275368 4/17 (24%)
C2H2 Zn finger 473..493 CDD:275370 3/19 (16%)
C2H2 Zn finger 501..522 CDD:275370 4/27 (15%)
pzgNP_649297.1 C2H2 Zn finger 241..263 CDD:275371 0/21 (0%)
C2H2 Zn finger 268..289 CDD:275371 5/20 (25%)
C2H2 Zn finger 297..318 CDD:275371 4/20 (20%)
C2H2 Zn finger 360..380 CDD:275368 1/19 (5%)
zf-H2C2_2 373..399 CDD:463886 4/25 (16%)
C2H2 Zn finger 390..410 CDD:275368 1/19 (5%)
C2H2 Zn finger 417..437 CDD:275368 2/19 (11%)

Return to query results.
Submit another query.