DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3815 and phf12b

DIOPT Version :9

Sequence 1:NP_572311.1 Gene:CG3815 / 31571 FlyBaseID:FBgn0029861 Length:878 Species:Drosophila melanogaster
Sequence 2:XP_002664670.2 Gene:phf12b / 325296 ZFINID:ZDB-GENE-110628-2 Length:942 Species:Danio rerio


Alignment Length:1018 Identity:298/1018 - (29%)
Similarity:430/1018 - (42%) Gaps:285/1018 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KLDQDPNASLSIMEQIKQLIRPPPNED-EKMMQRSTNTKHPYYRRPGRGHNHDYCDACEEGGNLL 66
            |:..|.:.|..:||||:||:.||.:|| ||..:....|     ||.||..|||.||:|.|||:||
Zfish     9 KILYDLDTSGGLMEQIQQLLAPPRSEDGEKRRKPERET-----RRGGRATNHDTCDSCREGGDLL 68

  Fly    67 CCDRCPSSFHLQCHDPPLSEEDIPSGQWLCHSC--------------------RMSKLSQPPASS 111
            |||.||::|||||.:||||.|.:|.|.|:||.|                    ::||.|..||:.
Zfish    69 CCDHCPAAFHLQCCNPPLSREMLPPGDWMCHRCSVRKKKREQKAEQVNGALERQLSKRSSSPAAE 133

  Fly   112 SKASS--VERVPSAGSG-----------------SRANTPSSGDLESIPLKIRNLRKRSNSERNS 157
            .:..:  ::.:|||.||                 ||..||:|......|         :.||.|.
Zfish   134 LELGTLRLDGLPSAASGGLRLAVAQVRLLERRTSSRPGTPTSNASTDTP---------TPSEHND 189

  Fly   158 TEKLLAKMPMSIQRALDPNKKP---TPLDDVIRAATMMNPQQFSLPPELELHTQFPGNGKVQPVQ 219
            .::.|..:...:|.:...|..|   .|...:|.||...||.||.||.||...|..||:.|.:..:
Zfish   190 VDEDLMDVEEDVQGSESENATPRLKKPFQMLIAAAMERNPTQFQLPSELTCTTSLPGSSKRRRKE 254

  Fly   220 QTHPPSGNGGNRRCAGNQRRNSKPFELDAQGLVPLPAKTCFYCTRSCKRAPLISCDYCPLYFHQD 284
            :.           ...|.:|  ...|||..||||||.|.||.|.:||:.||||.||||.|.||.|
Zfish   255 EA-----------IGKNMKR--PQHELDPSGLVPLPVKVCFTCGKSCRVAPLIQCDYCALLFHMD 306

  Fly   285 CLDPPLTALPAGLWMCPNHAENFIDANMTNSISATERVRLWNRFHQPLDHENVKLEFFRRVNTRN 349
            ||||||||:|.|.||||||.|:.: .|..| ::.:.|.::::.|...|....||::|.|.|:.::
Zfish   307 CLDPPLTAMPTGRWMCPNHVEHMV-LNQKN-VTLSTRCQVFDHFQDRLSQHAVKVDFLRWVHRQH 369

  Fly   350 PPFRTKRNLRARAHI-----EVPAIVRYHYDHPPPLLPSMRQTLRYDRVKRRN------------ 397
            .|     |.|...||     :||..::.||.:||.|:         |:|..||            
Zfish   370 HP-----NRRGVRHIKKKTLKVPNAIKSHYQNPPLLM---------DQVGLRNGELVPNGFMEQE 420

  Fly   398 ------NLPTEVEE-----------------ISRESVTESLLKDLEALRTAHAKFREIQ------ 433
                  :|.:|.|:                 :|.:.::.| |:|.|....:.||.:|..      
Zfish   421 CSSSTQHLTSEEEQEEWLRHVIALQCSIMKHLSAKQMSSS-LRDSEQADLSDAKTQECMEMQELS 484

  Fly   434 -------------------REFGTL---------ETAIDGDSDSDPSPEEKRTETNTPADKVNGE 470
                               :...|:         |.:..|::|   ||.||.|..|.|   |..|
Zfish   485 SQDSDYLQSRSTKVGPQGAQVLSTIVPKHPESCNEQSSQGEAD---SPTEKGTGVNGP---VACE 543

  Fly   471 VDT-------ENPNTESNAQASEQ--PSVVKVESKTSLEVEASFEEDEEDSKKSTGIID------ 520
            .||       ..|::.|..|..|.  |:.|.:::::|....:..:.|    ..||.::.      
Zfish   544 GDTCTTAETSHKPSSPSRRQNLESALPNHVDIKTESSSPFSSCMQRD----SPSTSLLSGSPARH 604

  Fly   521 --ADLLHLDVDIIKKLAHQRLQQLVEEHPEIVTQYKNRTAARRLRQLASVDGTHVAGETAALQGQ 583
              :.|.:....:...|:.|..:..|.  |::::..|..|....:..|.|.....|.|:|..    
Zfish   605 HGSTLGNSSSGLNSSLSSQTKENKVS--PDLMSAGKGSTLPSSIGSLYSYIKNVVQGDTEV---- 663

  Fly   584 LAPEDMNRFS-----LLFTSETSSILAQKNGNAADEDPATALHPALATAAAIAAADAAAESYAPR 643
                |||:..     ||.......:|:.|:..|:.:   ....||           |.|....|.
Zfish   664 ----DMNKLDEELIRLLAWQRIQQLLSPKSLQASSK---CGTPPA-----------ATASLSKPS 710

  Fly   644 ARSDTEKAYELASRLELKLLQCKVQARAVITPLGDMLEDSRWFSSLGLDHSIFMRYRTLYIGYGG 708
            ..:|.:|.              .||||||:.||            .|...:|.|.|||||||.|.
Zfish   711 LHADAQKR--------------DVQARAVLCPL------------TGKGAAINMCYRTLYIGTGA 749

  Fly   709 HYSPSTTLAQTETVDLSAIGYCCRISPQHAIIFYDEFSKSYELINYSEFGTEVNGQLYACDVTER 773
            ...          |.|:..|:|..:|.:||.|||||.:|.|||:||||.||.|:..||:||.:: 
Zfish   750 EMD----------VCLTNYGHCNYVSGKHACIFYDENTKHYELLNYSEHGTTVDNVLYSCDFSD- 803

  Fly   774 MTTHAGKPMRPDDAELKKRVDEMLDKRRNINRQFETKKIDKERLAPIVKPA-------------- 824
                  ||.....:.|..:|...:  |.|.:|    :.|.:....|:..|.              
Zfish   804 ------KPNITSPSALASKVQNSI--RGNKSR----RPIGEVSTEPVPVPTDSMMSSLAQGGPKN 856

  Fly   825 -CRCMNAGPVPMVDGA---WEGSAVLAHGSLLRFGCLSFVFVV 863
             |.| .|....::.|:   |||:|:|.|.|.::.|||.|:|.:
Zfish   857 PCNC-KASSSSLIGGSGAGWEGTALLHHSSCIKVGCLQFLFSI 898

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3815NP_572311.1 PHD1_PHF12 55..99 CDD:277008 28/43 (65%)
BAH 75..198 CDD:295389 46/164 (28%)
PHF12_MRG_bd 175..211 CDD:293342 15/38 (39%)
PHD2_PHF12_Rco1 259..303 CDD:277009 31/43 (72%)
FHA <732..>765 CDD:238017 19/32 (59%)
phf12bXP_002664670.2 PHD1_PHF12 57..101 CDD:277008 28/43 (65%)
BAH 77..>141 CDD:322012 21/63 (33%)
PHF12_MRG_bd 210..248 CDD:318859 16/37 (43%)
PHD2_PHF12_Rco1 280..325 CDD:277009 31/44 (70%)
FHA <741..>796 CDD:238017 30/64 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170586356
Domainoid 1 1.000 122 1.000 Domainoid score I5585
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 337 1.000 Inparanoid score I2356
OMA 1 1.010 - - QHG49783
OrthoDB 1 1.010 - - D1203363at2759
OrthoFinder 1 1.000 - - FOG0003315
OrthoInspector 1 1.000 - - otm25870
orthoMCL 1 0.900 - - OOG6_106762
Panther 1 1.100 - - O PTHR46309
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2689
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1111.000

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