DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3815 and Phf12

DIOPT Version :9

Sequence 1:NP_572311.1 Gene:CG3815 / 31571 FlyBaseID:FBgn0029861 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001013135.2 Gene:Phf12 / 303274 RGDID:1305731 Length:1004 Species:Rattus norvegicus


Alignment Length:1050 Identity:296/1050 - (28%)
Similarity:425/1050 - (40%) Gaps:291/1050 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DPNASLSIMEQIKQLIRPPPNEDEKMMQRSTNTKHPYYRRPGRGHNHDYCDACEEGGNLLCCDRC 71
            |.:.|..:||||:.|:.||..::.:...|....:.   ||.||..|||.||:|:|||:|||||.|
  Rat    13 DLDTSGGLMEQIQALLAPPKTDEAEKRSRKPEKES---RRSGRATNHDSCDSCKEGGDLLCCDHC 74

  Fly    72 PSSFHLQCHDPPLSEEDIPSGQWLCHSC--RMSKLSQPPASSSKASSVERVPSAGSGSRANTPSS 134
            |::|||||.:||||||.:|.|:|:||.|  |..|..|..........|::     |..|..:|||
  Rat    75 PAAFHLQCCNPPLSEEMLPPGEWMCHRCTVRRKKREQKKELGHVNGLVDK-----SSKRTTSPSS 134

  Fly   135 G-DLESIP-----LK----IRNLRKRSNSERNSTEKLLAKMPMS-----IQRALDPNKKPT---- 180
            . ||...|     ||    .|.|.:|::.....|.....:.|.|     .:..:|.:::|.    
  Rat   135 DTDLLDRPASKTELKAIAHARILERRASRPGTPTSNASTETPTSEHNDVDEDIIDVDEEPVAAEP 199

  Fly   181 ---------PLDDVIRAATMMNPQQFSLPPELELHTQFPGNGKVQPVQQTHPPSGNGGNRRCAGN 236
                     |.:.:|.||...||.||.||.||...|..||:.|.:..::|   :|.        |
  Rat   200 DYVQPQLRRPFELLIAAAMERNPTQFQLPNELTCTTALPGSSKRRRKEET---TGK--------N 253

  Fly   237 QRRNSKPFELDAQGLVPLPAKTCFYCTRSCKRAPLISCDYCPLYFHQDCLDPPLTALPAGLWMCP 301
            .:|..  .|||..||||||.|.||.|.|||:.||||.||||||.||.|||:|||||:|.|.||||
  Rat   254 VKRTQ--HELDHNGLVPLPVKVCFTCNRSCRVAPLIQCDYCPLLFHMDCLEPPLTAMPLGRWMCP 316

  Fly   302 NHAENFIDANMTNSISATERVRLWNRFHQPLDHENVKLEFFRRVNTRNPPFRTKRNLRARAHIEV 366
            ||.|:.: .|..| ::.:.|.|:::.|...:....||::|..|::.::||.|.......|..::|
  Rat   317 NHIEHVV-LNQKN-LTLSNRCRVFDGFQDTISQHAVKVDFLNRIHKKHPPNRRVLQPAKRRSLKV 379

  Fly   367 PAIVRYHYDHPPPLL---------------PSMRQTLRYDRVKRRNNLPTEVEE----ISRESVT 412
            |..::..|..||||:               |...||    .:....:|.|:.|:    .|..::.
  Rat   380 PDAIKSQYQFPPPLIAPAAIRDGELICSGVPEESQT----HLLNSEHLATQTEQQEWLCSVVALQ 440

  Fly   413 ESLLKDLEALRTAHAKFREIQREFGTLETAIDGDS---------DSDPSP--------------- 453
            .|:||.|.| :...:.:...|.|...::..|..||         |..|.|               
  Rat   441 CSILKHLSA-KQMPSHWDSEQTEKADIKPVIVTDSSITTSLQTADKAPLPSHYPLSCPSAMSTQN 504

  Fly   454 -----------------------EEKRTETNTPADKVNGEVDTENPNTESNAQASEQPS------ 489
                                   :.|:....|....||.||....|:..|:...|..|.      
  Rat   505 SLGCSPPHQPPTLEDISCSSCVEKSKKAPCGTANGPVNTEVKANGPHLYSSPTDSSDPRRLPGAN 569

  Fly   490 -------------------------------VVKVESKT--------SLEVEASFEEDEEDSKKS 515
                                           :||.|:.|        ||....|.......|..|
  Rat   570 TPLPGLTHRQGWPRPLTPPSAGGLQNHAVGIIVKTENATGPSSCPQRSLVPVPSLPPSIPSSCAS 634

  Fly   516 TGIIDADLLHLDVDIIKKLAHQRLQQLVEEHPEIVTQYKNRTAARRLRQLAS-VDGTHVAGETAA 579
              |.:...||.     |.:..|....|.|..|                 |.| .:.|.|      
  Rat   635 --IENTSTLHR-----KTVQSQIGPSLTESRP-----------------LGSPPNATRV------ 669

  Fly   580 LQGQLAPEDMNRFSLLFTSETSSILAQKNGNAADEDPATALHPALATAAAIAAADAAAESYAPRA 644
                |.|......|:|.|.......:....:.....|.|     |:..:|:......|.|.|...
  Rat   670 ----LTPPQAAGDSILATGANQRFCSPAPSSDGKVSPGT-----LSIGSALTVPSFPANSTAMVD 725

  Fly   645 RSDTEKAY-ELASRLELKLLQCK------------------------------------------ 666
            .:::.:|: :::..:|:.:|..|                                          
  Rat   726 LTNSLRAFMDVSGEIEINMLDEKLIKFLALQRIHQLFPSRGQASPGSVGTHPLSSGGHHTEVQRK 790

  Fly   667 -VQARAVITPLGDMLEDSRWFSSLGLDHSIFMRYRTLYIGYGGHYSPSTTLAQTETVDLSAIGYC 730
             ||||||..||            |||..::.|.|||||||.|....          |.|:..|:|
  Rat   791 EVQARAVFYPL------------LGLGGAVNMCYRTLYIGTGADMD----------VCLTNYGHC 833

  Fly   731 CRISPQHAIIFYDEFSKSYELINYSEFGTEVNGQLYACDVTERMTTHAGKPMRPDDAELKKRVDE 795
            ..:|.:||.|||||.:|.|||:||||.||.|:..||:||.:|:      .|..|..:.:.| |..
  Rat   834 NYVSGKHACIFYDENTKHYELLNYSEHGTTVDNVLYSCDFSEK------TPPTPPSSIVAK-VQS 891

  Fly   796 MLDKRRNINRQFETKK----IDKERLAPIVKPACRCMNAGPVPMVDGA---WEGSAVLAHGSLLR 853
            ::.:||:..:..|..:    :..:...|..:| |.| .|....::.|:   |||:|:|.|||.::
  Rat   892 VIRRRRHQKQDEEPSEEAAMMSSQAQGPQRRP-CNC-KASSSSLIGGSGAGWEGTALLHHGSYIK 954

  Fly   854 FGCLSFVFVV 863
            .|||.|||.:
  Rat   955 LGCLQFVFSI 964

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3815NP_572311.1 PHD1_PHF12 55..99 CDD:277008 29/43 (67%)
BAH 75..198 CDD:295389 46/152 (30%)
PHF12_MRG_bd 175..211 CDD:293342 14/48 (29%)
PHD2_PHF12_Rco1 259..303 CDD:277009 32/43 (74%)
FHA <732..>765 CDD:238017 19/32 (59%)
Phf12NP_001013135.2 PHD1_PHF12 58..102 CDD:277008 29/43 (67%)
PHF12_MRG_bd 203..241 CDD:293342 15/37 (41%)
PHD2_PHF12_Rco1 273..318 CDD:277009 32/44 (73%)
FHA <813..>868 CDD:238017 30/64 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345261
Domainoid 1 1.000 155 1.000 Domainoid score I4157
eggNOG 1 0.900 - - E1_KOG4299
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 370 1.000 Inparanoid score I2068
OMA 1 1.010 - - QHG49783
OrthoDB 1 1.010 - - D1203363at2759
OrthoFinder 1 1.000 - - FOG0003315
OrthoInspector 1 1.000 - - oto97948
orthoMCL 1 0.900 - - OOG6_106762
Panther 1 1.100 - - LDO PTHR46309
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2689
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.770

Return to query results.
Submit another query.