DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3815 and aire

DIOPT Version :9

Sequence 1:NP_572311.1 Gene:CG3815 / 31571 FlyBaseID:FBgn0029861 Length:878 Species:Drosophila melanogaster
Sequence 2:XP_012826738.3 Gene:aire / 106557435 XenbaseID:XB-GENE-6461262 Length:616 Species:Xenopus tropicalis


Alignment Length:293 Identity:73/293 - (24%)
Similarity:112/293 - (38%) Gaps:54/293 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 MEQIKQLIRPPPNEDEKMMQR-------------STNTKHPYYRRPGRGHNHDYCDACEEGGNLL 66
            ||:..:.:...|....|:..|             |...:.|.|:     .|.|.|..|.:||.|:
 Frog   216 MERELEAVEKNPTHPLKLTLRPKLISQQVGSIALSVPAELPQYQ-----SNDDECSVCRDGGELI 275

  Fly    67 CCDRCPSSFHLQCHDPPLSEEDIPSGQWLCHSCRMSK-LSQPPASSSKASSVERVPSAGSGSRAN 130
            |||.||.||||.|..|||:.  ||||.|.|.:|...: :|.......:.:.:.:.||..|....:
 Frog   276 CCDGCPRSFHLSCLVPPLTH--IPSGTWRCDTCNTGRPMSDGQPEMGETTGLSKKPSQESAETQS 338

  Fly   131 TPSSGDLESIPLKIRNLRKRSNSERNSTEKLLAKMPMSIQRALDPNKKPTPLDDVIRAATMMNPQ 195
            .......|.:..|..::.::|||.:|.....:...|     .:.|  |||       |.|....|
 Frog   339 QKRMKVCEMLADKHDSIIQKSNSIQNQIYPQIVAQP-----EICP--KPT-------ARTQTCSQ 389

  Fly   196 Q---FSLPPELELHTQFPGNGKVQPVQQTHPPSGNGGNRRCAGNQRRNSKPFELDAQGL-VPLPA 256
            |   :..||:.:...|     .:..:..:..|.....::....:..|.|...:.::|.| :|.|.
 Frog   390 QQSSYQAPPQPQACPQ-----SLSSLCMSQTPLRQFCSQLVPRSHIRTSHQLQTNSQHLSIPQPC 449

  Fly   257 KTCFYCTRSCKRAPLISCDYCPLYFHQDCLDPP 289
            .|         ..|.|.|....|. .|:|..||
 Frog   450 ST---------SGPQIPCTTLTLQ-SQNCPTPP 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3815NP_572311.1 PHD1_PHF12 55..99 CDD:277008 24/43 (56%)
BAH 75..198 CDD:295389 33/126 (26%)
PHF12_MRG_bd 175..211 CDD:293342 11/38 (29%)
PHD2_PHF12_Rco1 259..303 CDD:277009 8/31 (26%)
FHA <732..>765 CDD:238017
aireXP_012826738.3 HSR 11..103 CDD:397335
PHD1_AIRE 264..306 CDD:277014 24/43 (56%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1203363at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.